Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-34 seq5 95.1 2e-17 >seq1 Length=33916305 Score = 150 bits (166), Expect = 4e-34 Identities = 157/205 (77%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| |||||||||| |||||||||||| ||||| | |||| | || || Sbjct 17529457 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGG 17529398 Query 198 AAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254 | ||| | | || ||||||||| ||||| | |||||||| | || | | ||| Sbjct 17529397 A---CATTGGTCCTCGAGCGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCG 17529341 Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 ||||| |||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| Sbjct 17529340 AGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCA 17529281 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| ||| || |||||| Sbjct 17529280 ACGGATAAAAGTTACTCTAGGGATA 17529256 >seq5 Length=20131956 Score = 95.1 bits (104), Expect = 2e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 258 AGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACG 317 || || ||||||||| |||| ||||||| |||||| || ||||| ||||||||||| ||| Sbjct 8706589 AGAGATGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACG 8706648 Query 318 GATAAAAGCTACCCTGGGGATA 339 |||||||| ||| || |||||| Sbjct 8706649 GATAAAAGTTACTCTAGGGATA 8706670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982375528416