Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3 241 5e-61 seq6 114 5e-23 >seq3 Length=29620734 Score = 241 bits (266), Expect = 5e-61 Identities = 343/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 16593789 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 16593730 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 16593729 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 16593670 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 16593669 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 16593610 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | || | | Sbjct 16593609 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 16593555 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 16593554 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 16593498 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 16593497 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 16593447 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 16593446 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 16593387 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 16593386 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 16593331 Score = 104 bits (114), Expect = 8e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 10298681 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 10298622 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| Sbjct 10298621 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTC 10298570 >seq6 Length=21794218 Score = 114 bits (126), Expect = 5e-23 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| | ||||| |||| ||| | |||||| ||||||||||||| ||||||||||| Sbjct 4452785 TTTCATATTCTATTCCACTACCCACTAGGGGTTCTTTTCACCTTTCTCTCACGGTACTAC 4452844 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 | |||||||||||| |||||||||||| ||| |||||||| | |||||||||| Sbjct 4452845 TTTGCTATCGGTCACTCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACG 4452904 Query 592 AAATTTCA 599 |||||| Sbjct 4452905 GGATTTCA 4452912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817554723584