Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3 199 1e-48 seq6 122 2e-25 seq5 82.4 2e-13 >seq3 Length=29620734 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 16593723 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 16593667 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 16593666 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 16593611 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 16593610 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 16593553 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 16593552 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 16593493 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 16593492 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 16593433 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 16593432 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 16593374 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 16593373 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 16593314 Query 420 G 420 | Sbjct 16593313 G 16593313 >seq6 Length=21794218 Score = 122 bits (134), Expect = 2e-25 Identities = 206/294 (70%), Gaps = 11/294 (4%) Strand=Plus/Plus Query 136 CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTA----AGCTTTGC 189 ||| ||| |||||||||||| ||||| | |||| | |||| ||| | | || Sbjct 4452639 CGCTCTATGAAGACTCGCTTT-CGCTATGGCTCCGGTGGATTCCGTTCCCTTAACCAAGC 4452697 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||| | || |||| | | |||| | ||| || |||| |||| | || | Sbjct 4452698 CACCGCCTATGAGTCAACGGCTCATTCTTCAACGGGCACGCGGTCAGAGATCACTTTCCC 4452757 Query 250 CTCCCACTGCTTGTACGC---ATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 || |||||||||| || | || ||||| |||||| |||| ||| || ||||| Sbjct 4452758 CTTCCACTGCTTGGGAGCTCAACACACTTTCATATTCTATTCCACTACCCACTA-GGGGT 4452816 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| |||||| |||||||||||| || |||||||||| |||| |||||||||||| Sbjct 4452817 TCTTTTCACCTTTCTCTCACGGTACTACTTTGCTATCGGTCACTCAGGAGTATTTAGCCT 4452876 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || |||| ||||| || | ||||||| Sbjct 4452877 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTTCACGTGCCCCATGCTACTCG 4452930 >seq5 Length=20131956 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/98 (80%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || | |||||||| | ||||||||| | ||| || ||||| Sbjct 4707316 CTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCAGTACCCACTG-GGGGT 4707258 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 |||| || ||||||||||||||||||| ||| || ||| Sbjct 4707257 TCTTCTCACCTTTCCCTCACGGTACTACTTCGCTCTCG 4707220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241569071744