Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3 208 2e-51 seq1 138 3e-30 seq2 116 9e-24 seq4 113 1e-22 >seq3 Length=29620734 Score = 208 bits (230), Expect = 2e-51 Identities = 298/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 16594339 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16594280 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 16594279 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 16594220 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 16594219 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 16594164 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 16594163 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16594108 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 16594107 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 16594049 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 16594048 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 16593989 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 16593988 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16593940 >seq1 Length=33916305 Score = 138 bits (152), Expect = 3e-30 Identities = 146/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGA 270 ||||||||| ||| |||| ||||| | ||| | |||| | || || |||||| Sbjct 17530702 AGCTTCGGCAGATCGCTTA-GCCCCATT-CATCTTTAGCGCAAGGGCGCTCGATCAGTGA 17530759 Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCA 330 ||||||||||||||||| |||| ||||| |||| | || |||||||||| ||||| ||| Sbjct 17530760 GCTATTACGCACTCTTTAAAGGGTGGCTCCTTCTAGGCAAACCTCCTGGCTGTCTTTGCA 17530819 Query 331 ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGT 390 | |||| || ||| ||||||| || ||||||||||||| || ||||| || ||| Sbjct 17530820 CCCCCACCTCATTTATCACTGAGCGGTCATTTAGGGGCCTTAGTTGGTGATCCAGGTTGT 17530879 Query 391 TTCCCTCTCG 400 |||||||||| Sbjct 17530880 TTCCCTCTCG 17530889 >seq2 Length=27082872 Score = 116 bits (128), Expect = 9e-24 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || |||||||||| |||||||| |||| |||||||||||||||||||| |||||||| Sbjct 260437 CTAGACCAGTGAGGTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCGCACCTCCTG 260378 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| ||| ||| |||||| ||||| ||| | ||||||| ||||||| | Sbjct 260377 GTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTAC 260318 Query 379 GATCTGGGC 387 ||||||||| Sbjct 260317 GATCTGGGC 260309 >seq4 Length=21479432 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340 ||||||| |||| |||||||||| | || |||||||||| ||||| ||| | |||| || Sbjct 16347628 ACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTC 16347569 Query 341 CTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| ||| || || |||||||||||||||| |||| ||||||||||||||||| Sbjct 16347568 CTTTATCACCAAGCGGTCATTTAGGGGCCTTAGCTGGTGATTCGGGCTGTTTCCCTCTCG 16347509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177570665984