Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq3 208 2e-51
seq1 138 3e-30
seq2 116 9e-24
seq4 113 1e-22
>seq3
Length=29620734
Score = 208 bits (230), Expect = 2e-51
Identities = 298/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 16594339 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16594280
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
|||| |||||| | |||| | | |||||| |||| | || |||||| |||
Sbjct 16594279 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 16594220
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || || ||| | | | | ||| ||||| || || | |
Sbjct 16594219 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 16594164
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 16594163 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16594108
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| || |||| | || || ||||||||||||||||||||||| |||
Sbjct 16594107 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 16594049
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | |||| |||||| |||||
Sbjct 16594048 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 16593989
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 16593988 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16593940
>seq1
Length=33916305
Score = 138 bits (152), Expect = 3e-30
Identities = 146/190 (77%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGA 270
||||||||| ||| |||| ||||| | ||| | |||| | || || ||||||
Sbjct 17530702 AGCTTCGGCAGATCGCTTA-GCCCCATT-CATCTTTAGCGCAAGGGCGCTCGATCAGTGA 17530759
Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCA 330
||||||||||||||||| |||| ||||| |||| | || |||||||||| ||||| |||
Sbjct 17530760 GCTATTACGCACTCTTTAAAGGGTGGCTCCTTCTAGGCAAACCTCCTGGCTGTCTTTGCA 17530819
Query 331 ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGT 390
| |||| || ||| ||||||| || ||||||||||||| || ||||| || |||
Sbjct 17530820 CCCCCACCTCATTTATCACTGAGCGGTCATTTAGGGGCCTTAGTTGGTGATCCAGGTTGT 17530879
Query 391 TTCCCTCTCG 400
||||||||||
Sbjct 17530880 TTCCCTCTCG 17530889
>seq2
Length=27082872
Score = 116 bits (128), Expect = 9e-24
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| |||||||||| |||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 260437 CTAGACCAGTGAGGTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCGCACCTCCTG 260378
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
|||||| ||| ||| |||||| ||||| ||| | ||||||| ||||||| |
Sbjct 260377 GTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTAC 260318
Query 379 GATCTGGGC 387
|||||||||
Sbjct 260317 GATCTGGGC 260309
>seq4
Length=21479432
Score = 113 bits (124), Expect = 1e-22
Identities = 97/120 (81%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340
||||||| |||| |||||||||| | || |||||||||| ||||| ||| | |||| ||
Sbjct 16347628 ACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTC 16347569
Query 341 CTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|||| ||| || || |||||||||||||||| |||| |||||||||||||||||
Sbjct 16347568 CTTTATCACCAAGCGGTCATTTAGGGGCCTTAGCTGGTGATTCGGGCTGTTTCCCTCTCG 16347509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177570665984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |