Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-22 >seq1 Length=33916305 Score = 111 bits (122), Expect = 1e-22 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | |||||||| ||| | | |||| | ||||| ||||| ||| | | Sbjct 9862461 CGAGTTGCAAAGAACAATCCGAACTGAGGCAATCTTT-TCGGATTCGCTCCGCCTTACAG 9862519 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 9862520 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 9862579 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 | |||||||||||||||||||||||||||| || Sbjct 9862580 GCGGACTTGACGTCATCCCCACCTTCCTCCAGT 9862612 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 22039207 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 22039148 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 22039147 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 22039088 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 22039087 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 22039053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415989961270