Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 4e-64
seq5 223 5e-56
>seq1
Length=33916305
Score = 250 bits (276), Expect = 4e-64
Identities = 220/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 17528933 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 17528992
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 17528993 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 17529052
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 17529053 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 17529112
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || | ||||||||||||||||||||||||||| |||
Sbjct 17529113 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 17529172
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| |||| ||||| | || ||||||||||||
Sbjct 17529173 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 17529205
>seq5
Length=20131956
Score = 223 bits (246), Expect = 5e-56
Identities = 214/273 (78%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 8706993 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 8706934
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 8706933 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 8706874
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| |||||||| |||||| ||
Sbjct 8706873 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAATTGTCTCACG 8706814
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
| ||||||||||||| || | | || | ||||||||||||||||||||||||||| |||
Sbjct 8706813 ATGTTCTGAACCCAGTTCACATACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 8706754
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| ||| ||||| | || ||| ||||||||
Sbjct 8706753 CCTATAGCTCCAGGTGGCGAAGAGGCGACATCG 8706721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780781158076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |