Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq182 215 1e-53 >seq182 Length=15015 Score = 215 bits (238), Expect = 1e-53 Identities = 242/321 (75%), Gaps = 17/321 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG-------- 71 || |||||| ||||||||||||||| | |||| || || ||||| Sbjct 8075 GAACGAGACTCTAACCTGCTAAATAGACGTACCCGGCTTCCAAGGCAGCCGGCGGTACTA 8016 Query 72 ---CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| |||||| ||||| | || |||| |||||||||||||| Sbjct 8015 AATCTTCTTAGAGGGACAGGCGGCTCTTAGCCGCACG-AGATTGA-GCAATAACAGGTCT 7958 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||||||||||||||||||||||||| || | | || || || Sbjct 7957 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGGAGGTGTCAGCGTGT--- 7901 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | || |||||| ||||||||||||| | | |||| | || | || ||||| | | Sbjct 7900 CCTCCCTGGCCGAAAGGTCTGGGTAACCCGCTGAAACGCCTTCTTACTAGGGATTGTGGC 7841 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| | | | | |||||||||| || ||||| ||||||||||||||||| ||| Sbjct 7840 TTGAAATTGTACCACATGAACGAGGAATTCCCAGTAAAGGCGTGTCATCAGCACGCCTTG 7781 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 7780 ATTACGTCCCTGCCCTTTGTA 7760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947176405248