Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3 181 4e-43 seq1 98.7 3e-18 >seq3 Length=29620734 Score = 181 bits (200), Expect = 4e-43 Identities = 395/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 16593588 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 16593647 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 16593648 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 16593707 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 16593708 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 16593767 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 16593768 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 16593822 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 || | ||| | | | ||||||| | |||||||| |||| | || Sbjct 16593823 TCGG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 16593881 Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 16593882 CCAAAAATAACAGGGGCCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 16593941 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 16593942 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 16593999 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 16594000 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 16594058 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | |||| |||| || Sbjct 16594059 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 16594117 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 16594118 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 16594158 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| | Sbjct 10298570 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 10298629 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | | ||| || |||||||||||| |||||| Sbjct 10298630 CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 10298665 >seq1 Length=33916305 Score = 98.7 bits (108), Expect = 3e-18 Identities = 110/145 (76%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || || | ||| | || |||||||||| ||||||| ||| ||| | | | Sbjct 17530889 CGAGAGGGAAACAACCTGGATCACCAACTAAGGCCCCTAAATGACCGCTCAGTGATA--A 17530832 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||| ||||| | ||||||| Sbjct 17530831 ATGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGGAGCCACCC-TTTAAAG 17530773 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| |||||||| ||||| Sbjct 17530772 AGTGCGTAATAGCTCACTGATCGAG 17530748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689557912064