Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq3 181 4e-43
seq1 98.7 3e-18
>seq3
Length=29620734
Score = 181 bits (200), Expect = 4e-43
Identities = 395/582 (68%), Gaps = 36/582 (6%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||||
Sbjct 16593588 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 16593647
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | | | | || |||||||||||| ||| |||||||| |||
Sbjct 16593648 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 16593707
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 16593708 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 16593767
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| |||||| |||||||||
Sbjct 16593768 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 16593822
Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290
|| | ||| | | | ||||||| | |||||||| |||| | ||
Sbjct 16593823 TCGG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 16593881
Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337
|| || | ||| |||||| ||||| | |||| | | | ||
Sbjct 16593882 CCAAAAATAACAGGGGCCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 16593941
Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397
||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | ||
Sbjct 16593942 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 16593999
Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457
|| || | ||| |||||||| |||| ||| || | |||||||||| | |||||||||
Sbjct 16594000 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 16594058
Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517
||||||| |||||||| ||||| | ||| || || | |||| |||| ||
Sbjct 16594059 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 16594117
Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 16594118 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 16594158
Score = 93.3 bits (102), Expect = 1e-16
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151
|||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| |
Sbjct 10298570 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 10298629
Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187
| | | ||| || |||||||||||| ||||||
Sbjct 10298630 CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 10298665
>seq1
Length=33916305
Score = 98.7 bits (108), Expect = 3e-18
Identities = 110/145 (76%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || || | ||| | || |||||||||| ||||||| ||| ||| | | |
Sbjct 17530889 CGAGAGGGAAACAACCTGGATCACCAACTAAGGCCCCTAAATGACCGCTCAGTGATA--A 17530832
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| |||||||| |||| ||| || | |||| ||||| | |||||||
Sbjct 17530831 ATGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGGAGCCACCC-TTTAAAG 17530773
Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480
||||||||| |||||||| |||||
Sbjct 17530772 AGTGCGTAATAGCTCACTGATCGAG 17530748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689557912064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |