Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq3 82.4 1e-13
seq1 80.6 5e-13
>seq3
Length=29620734
Score = 82.4 bits (90), Expect = 1e-13
Identities = 92/122 (75%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189
||||||||||||| ||| ||| ||| || ||| ||||||||||||||| | ||
Sbjct 14965074 ATTGCATGCTGAAACCATGAGTAACCAAGAGACAACCTAGCGAACTGAAACATCATACTA 14965015
Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249
| || ||||||||| || | |||||| | ||||||| |||| ||||||||| |||
Sbjct 14965014 GTGAGAGAAAAAGAAATAAAAAGTGATTCCTATAGTAGTGACGAGTGAAATGGGAGCAGC 14964955
Query 250 CT 251
||
Sbjct 14964954 CT 14964953
>seq1
Length=33916305
Score = 80.6 bits (88), Expect = 5e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235
||||||||| |||||| ||||||||||| ||| | ||||||| |||||||||||||
Sbjct 23334617 GAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGC 23334676
Query 236 GAAATGGGA 244
|||||||||
Sbjct 23334677 GAAATGGGA 23334685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918377122656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |