Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 1e-13 seq1 80.6 5e-13 >seq3 Length=29620734 Score = 82.4 bits (90), Expect = 1e-13 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||||||||||||| ||| ||| ||| || ||| ||||||||||||||| | || Sbjct 14965074 ATTGCATGCTGAAACCATGAGTAACCAAGAGACAACCTAGCGAACTGAAACATCATACTA 14965015 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 | || ||||||||| || | |||||| | ||||||| |||| ||||||||| ||| Sbjct 14965014 GTGAGAGAAAAAGAAATAAAAAGTGATTCCTATAGTAGTGACGAGTGAAATGGGAGCAGC 14964955 Query 250 CT 251 || Sbjct 14964954 CT 14964953 >seq1 Length=33916305 Score = 80.6 bits (88), Expect = 5e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 ||||||||| |||||| ||||||||||| ||| | ||||||| ||||||||||||| Sbjct 23334617 GAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGC 23334676 Query 236 GAAATGGGA 244 ||||||||| Sbjct 23334677 GAAATGGGA 23334685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918377122656