Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq182 466 6e-129 seq234 327 4e-87 seq10 122 3e-25 >seq182 Length=15015 Score = 466 bits (516), Expect = 6e-129 Identities = 434/549 (79%), Gaps = 28/549 (5%) Strand=Plus/Plus Query 13 CTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAA 72 |||||| ||| |||||| ||| |||| ||||||||||| |||||| ||| | Sbjct 3111 CTCTACGCGAGGTTTCTGGCCTCACTGAGCTGGTCTTAGGACACCCACGTTATTCTTTGA 3170 Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC------ 126 ||||| ||||||||| |||||||||| |||| | |||| |||| |||||| Sbjct 3171 TGGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCTGTGTCCTCAAATCGGATCACACAC 3230 Query 127 --GGCCCGC-GAAGGACCTT----AACGCCAGAAAA-TGGTCGGTGAAG------ACCAG 172 || | || || ||||| | | |||| | | | ||| ||| || || Sbjct 3231 CGGGTCTGCCGAGGGACCATTCTCAGCGCCGGTATGCTTGTCCCGAAAGTCACCCACTAG 3290 Query 173 -------TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG 225 |||||||| ||||| |||||| || ||| || | |||||||||||||||| Sbjct 3291 GTGGGCCTTCCGCTTAATTGAGTAAGTACAACAACAATGAAAGTAGTGGTATTTCACTGT 3350 Query 226 CGCCGAAACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284 || | ||| ||| |||||||||| |||| ||||||| ||| || ||| || | |||| Sbjct 3351 CGACCAAAAGGCCTCCCACTTATGCTACGCCTCTCATGTCGTTGCACGCAGCCAAACTAA 3410 Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||| Sbjct 3411 AGTCAAGCTCAACAGGGTCTTCTTTCCCCACTGATAATTGCAAGTCCGTTCCCTTGCCTG 3470 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||| | |||||||||||||||||| | | ||||||||||||||||||||||| Sbjct 3471 CGGTTTCGCTGAAGAGTAGATAGGGACAGTGGAAGTTTCGTTAATCCATTCATGCGCGTC 3530 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3531 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 3590 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3591 ACCCGCGCTTCATTGAATTTCTTCACATTGACATTCAGAGCACTGGGCAGAAATCACATC 3650 Query 525 GCGTCAACA 533 |||||| || Sbjct 3651 GCGTCATCA 3659 >seq234 Length=7173 Score = 327 bits (362), Expect = 4e-87 Identities = 219/243 (90%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| || | ||| |||||||||||||||||||||| | | |||||||| Sbjct 6992 GAATAAGTAAAATAATGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GTCTCCCACT 6934 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 6933 TATCCTACACCTCTCAAGTCATTTCACAAAGTCCGACTAGAGTCAAGCTAAACAGGGTCT 6874 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| Sbjct 6873 TCTTTCCCCGCTGATTCCGCCAAGCATGTTCCCTTGATTGTGGTTTCGCTGGATAGTAGA 6814 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||| Sbjct 6813 CAGGGACAGTGGGAATCTCGCTAACCCATTCATGTGCATCACTAATTAGATGACGAGGCA 6754 Query 425 TTT 427 ||| Sbjct 6753 TTT 6751 >seq10 Length=14643570 Score = 122 bits (134), Expect = 3e-25 Identities = 150/200 (75%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 331 CGTTCCCTTGGC--TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 || ||||||| | ||||||| | |||| ||| ||||| | | ||| ||||||||||| Sbjct 1474698 CGCTCCCTTGACCGTGTGGTTCCATTAGACAGTGGATAGAGTAAATGGAAATCTCGTTAA 1474639 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 || ||| ||| || || | |||||| ||||| |||||||| |||||||| |||| ||| Sbjct 1474638 TCTATTTATGTGCATCGTTTATTAGACAACGAGACATTTGGCAACCTTAAG-GAGTAATA 1474580 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA----CATTCAGAG 504 || || | | ||| | |||| |||||||||||||||||| | || |||||| Sbjct 1474579 CTTGCTTTTGTCATTTGTTTGTGCTT-GTTGAATTTCTTCACTTTAACACTCACTCAGAG 1474521 Query 505 CACTGGGCAGAAATCACATT 524 ||| |||| ||||||||| Sbjct 1474520 CAC--CGCAGGAATCACATT 1474503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635159267168