Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3 141 3e-31 seq5 102 3e-19 seq1 100 1e-18 >seq3 Length=29620734 Score = 141 bits (156), Expect = 3e-31 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 16595007 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 16594948 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | || || | || || Sbjct 16594947 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCA 16594894 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 16594893 TCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 16594839 >seq5 Length=20131956 Score = 102 bits (112), Expect = 3e-19 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 16417 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCA 16476 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 16477 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 16536 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 || | || |||||||| ||| ||||||||| |||||||||||||||| |||| Sbjct 16537 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTT 16592 >seq1 Length=33916305 Score = 100 bits (110), Expect = 1e-18 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| | Sbjct 30228420 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGATCGCCGTTCA 30228479 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 30228480 CCGGGGCTTC 30228489 Score = 75.2 bits (82), Expect = 4e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || | ||| | ||| || | Sbjct 17529340 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCGCTCGAGGACCA-ATGTC 17529398 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 17529399 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 17529457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702357593216