Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq182 403 5e-110 seq10 80.6 8e-13 >seq182 Length=15015 Score = 403 bits (446), Expect = 5e-110 Identities = 406/520 (78%), Gaps = 27/520 (5%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||| || || | | ||| || |||| ||| | | |||||||||||||| Sbjct 8943 CATTCCAATTACGAGGCCTCGGATGAGTCCCGTATTGTTATCTTTCGTCACTACCTCCCC 9002 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 9003 GTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTGTCTC 9062 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| || Sbjct 9063 AGGCTGCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGTAAGCA 9122 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | | ||||||||||||||||||||||||| ||||||| || | |||| ||| | || Sbjct 9123 TAGAACTTACCATCGAAAGTTGATAGGGCAGACATTTGAAAGATGCGTCGCTGGCGCGAG 9182 Query 245 GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG------- 295 ||||||||| | | |||||||| || ||||||| | | |||||| || Sbjct 9183 GCCATGCGATCTGCACAAAGTTATTCAGAGTCACCAA--AAACACGAAGGCCGAAGCCAA 9240 Query 296 ---TTGGTTTTTTATCTAATAAA-----TACACCCCT-TCCGAAGTCGGGGTT--TTTAG 344 |||| |||| |||||||||| | | ||| | |||| ||| | | || | Sbjct 9241 CGATTGG-TTTTGATCTAATAAAAGCGTTCCTCCCGTCTCCG--GTCAGAACTCCGTTGG 9297 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||| || ||| || | |||||||| ||| ||||| ||| ||| ||| Sbjct 9298 CATGTATTAGCTCCAGTATTTCCGCAGTTATCCAAGTAACTGGGTACAATCCAATGAACC 9357 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 || |||||| ||||||||| | ||| ||||||| || | || |||| |||| ||||| Sbjct 9358 ATGACTGATATAATGAGCCTTCCGCGGTTTCACCATAAAAATAGCTTGCACTTGCACATG 9417 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| ||||||||| | |||||||| Sbjct 9418 CATGGCTTAATCTTTGAGAGAAGCATATGTC-ACTGGCAG 9456 >seq10 Length=14643570 Score = 80.6 bits (88), Expect = 8e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 ||||||| || | | | || || |||||||||| ||||| |||||| |||||||||| Sbjct 3118838 CTAATTCTCCATCAACAGTCACCACTATGGTAGGCCCCTATCTTACCATTGAAAGTTGAT 3118779 Query 209 AGGGCAGAAATTTGAATGA 227 | ||||||||||||||||| Sbjct 3118778 AAGGCAGAAATTTGAATGA 3118760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510362375936