Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 149 5e-31 >seq6 Length=21794218 Score = 149 bits (164), Expect = 5e-31 Identities = 566/877 (65%), Gaps = 21/877 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||||||| ||| | | || ||| | ||||| ||||||| || || |||| Sbjct 6279384 TGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 6279325 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA----GCGTTTATCG 61179 |||||| ||||||||||| | ||| ||| | ||||||| ||| | || Sbjct 6279324 GGACGGCCGAGGAGGTCGACCTCTCCTCCGACGCGCGCCACTGGGACGCCGCGCTG-TCC 6279266 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 || || | || ||||| || ||| |||| ||||| || || |||||||| ||| Sbjct 6279265 CCCGACGAGCGCCACTTCATCTCCCACGTGCTGGCCTTCTTCGCGGCGTCGGACGGCATC 6279206 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| | | | ||| | || ||||| || | ||||| || Sbjct 6279205 GTGCTCGAGAACCTCGCGTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCACGCGCC 6279146 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||||||||||||| | || || Sbjct 6279145 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTC 6279086 Query 61360 GATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 || || |||||| | || | | || | | || || | ||| ||||| || || | Sbjct 6279085 GAGACCTACATCCGCGACGACGTCGAGAAG-GACCGCCTCTTCCGCGCCATAGACACCGT 6279027 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA- 61477 || || ||| || || || || |||||| | |||||| || |||| | Sbjct 6279026 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATC-----GACGGCGGCGAG 6278972 Query 61478 -CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 || | || || | | || || || |||||||| | || ||| || || Sbjct 6278971 CGCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCC 6278912 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 || ||| ||||| ||| | ||||| || || || ||||| || || || ||| ||| Sbjct 6278911 TTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAAC 6278852 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 ||| | || || |||||||||||| |||| || || || || | || | | | | | Sbjct 6278851 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTC 6278792 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 || | | | | || | |||| || || | ||||| ||| || || || Sbjct 6278791 -CTCCGCGGCA-AGCTCGAC-GAGGTCCGCGTCCGCGAGATCGTTGCCGACGCCGTCGAC 6278735 Query 61717 ATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTG 61774 ||||| ||| || |||| ||||| | |||||| | ||| |||||||||| | | Sbjct 6278734 ATCGAGAGGGAGTTCGTCTG--CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCG 6278677 Query 61775 GACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGA 61834 || ||| ||||| || || || || |||||||| || | | | |||| | Sbjct 6278676 ACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCCCTGGGCTGCA 6278617 Query 61835 AGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894 || ||| || || |||||||| || | ||||| | || || ||| | |||| Sbjct 6278616 AGAAGATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 6278557 Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || || |||||||| || || |||||||| || Sbjct 6278556 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 6278520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555930208240