Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq8 109 6e-19 seq3 100 3e-16 seq7 87.8 2e-12 >seq1 Length=33916305 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| ||||||| || || |||||| || || | ||| | | ||||| | ||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 160250 GGTTCTTTCTCCGATGCTATG 160270 || |||||| |||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 >seq8 Length=18224760 Score = 109 bits (120), Expect = 6e-19 Identities = 141/191 (74%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 160604 TGGTTCACT--GCCCTT--GGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTT 160659 ||||||||| || ||| ||| || || |||||| ||||| || || || ||||| || Sbjct 4907529 TGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTT 4907470 Query 160660 CAACCAGTCCATC-TTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTA 160718 |||||| | | || | ||| ||| || ||| | || |||||||| || | | | Sbjct 4907469 CAACCAATTTGTAGTTAGCCAA---AGGTCATGTTATAAATACTTGGGCTGATATCATCA 4907413 Query 160719 ACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCG 160778 ||| ||| ||| || | |||||| |||||||| ||||| ||||||||||||||||| | Sbjct 4907412 ACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAG 4907353 Query 160779 ACCTTGCTGCT 160789 |||| ||| || Sbjct 4907352 ACCTAGCTACT 4907342 >seq3 Length=29620734 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 ||||||| ||||| || || || || || |||||||| || |||||||| || | Sbjct 28668171 TCCTTGATGCTGCCGAGACCGCCGGAGTGGAGCTGCCCTACTCATGCCGTGCTGGAGCAT 28668230 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 ||||||| |||||||||||||||||| ||| || || || || || || || |||| Sbjct 28668231 GCTCTACCTGTGCTGGTAAGATTGAGGCTGGCACCGTCGACCAGTCGGACGGGTCATTCC 28668290 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGT 161135 | ||||||| || | ||| ||| | ||| ||||| ||||| Sbjct 28668291 TTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGCGT 28668333 >seq7 Length=18603524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 161854 CGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTC 161912 ||||| ||||||||||||| ||| || | | | ||||| ||||| ||| | ||||| Sbjct 9543598 CGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGTGGCCTTATAATGCAATTTCATTCTC 9543656 Query 161913 TGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTG 161972 ||| || || ||||||||||| ||| || || || ||||| ||||| || || ||| Sbjct 9543657 TGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGCTG 9543716 Query 161973 GTTCTTCGCGCC 161984 |||||| ||||| Sbjct 9543717 GTTCTTTGCGCC 9543728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551358831529800