Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq1 102 1e-16 seq7 87.8 2e-12 >seq8 Length=18224760 Score = 116 bits (128), Expect = 5e-21 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 189678 CATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAA-GGTC 189736 |||||| |||||||| || || ||||| ||||| |||| || | | | | ||| |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 189737 GTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGC 189796 |||| | || || ||||| || | |||||| |||| |||||||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 189797 ATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGC 189833 | || ||||| ||||||||||||||||| || || || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 >seq1 Length=33916305 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-AT 189236 || |||||||||||||||||||| || |||||| ||||||||||||||||| ||| | Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 8033810 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || ||||| | ||||||||| || | | | || || | || ||| ||||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 189297 AGGTTCTTTCTCTGA 189311 ||| ||||||||| Sbjct 8033749 AGGAAGTTTCTCTGA 8033735 Score = 86.0 bits (94), Expect = 8e-12 Identities = 183/266 (69%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 190280 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACT 190339 |||| | || ||| | |||| ||| || ||||| | | |||| | | ||| |||||||| Sbjct 14419131 TTTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACT 14419073 Query 190340 GGCAC-GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 190398 || | |||| || | || |||| ||||| ||| |||||| |||||| | | Sbjct 14419072 TGCTCAGTCTGTTCAATTTCAA-CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTA 14419014 Query 190399 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCAT 190458 ||| |||| ||| || | || | || || || ||| | | ||||||||| || ||| Sbjct 14419013 TTTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAA 14418954 Query 190459 CCTTCGGTGTGGCAGCG--ATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTG 190516 || || || ||| | ||||| | ||| ||||||||| || | || |||||||| Sbjct 14418953 ATTTTGGCGTAGCAATGGTATCTT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTG 14418896 Query 190517 GACGCT-GAACCCCTTCCACATGATG 190541 ||| | ||||| || || |||||| Sbjct 14418895 GACATTATAACCCATTTCATATGATG 14418870 >seq7 Length=18603524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 190326 CGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTC 190384 ||||| ||||||| || || ||| || | | | ||||| ||||| ||| | ||||| Sbjct 9543598 CGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGTGGCCTTATAATGCAATTTCATTCTC 9543656 Query 190385 TGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTG 190444 ||| || ||||||||||||||| ||| || || || || || ||||| ||||| | || Sbjct 9543657 TGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGCTG 9543716 Query 190445 GTTCTTCGCGCC 190456 |||||| ||||| Sbjct 9543717 GTTCTTTGCGCC 9543728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634060256334000