Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq8 120 3e-22 seq1 102 9e-17 >seq8 Length=18224760 Score = 120 bits (132), Expect = 3e-22 Identities = 147/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 161367 GGTATCTGGTTCACT--GCACTT--GGTGTCTCCACCATGGCATTCAACCTGAACGGATT 161422 |||| ||||||||| || ||| ||| | | |||||| |||||||| |||||||| Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 161423 CAACTTCAACCAGTCCATCATGGATGGTCAG-GGCAAAGTCCTGAACACCTGGGCTGACG 161481 ||| |||||||| | | | | | | || || | || | || || |||||||| Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 161482 TTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 161541 | | || | |||||| ||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 161542 CTCTGGATCTCGCTGCT 161558 |||| || || ||| || Sbjct 4907358 CTCTAGACCTAGCTACT 4907342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/189 (71%), Gaps = 13/189 (7%) Strand=Plus/Minus Query 160684 CTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATG 160743 |||| || || | || || || ||||| ||||| || ||| || |||| | | || | Sbjct 9460993 CTGCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTACG 9460934 Query 160744 GAAACAACATCATCTCTG---GTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 160800 ||||||| || ||||||| |||| || ||||| |||| || || || | ||| Sbjct 9460933 GAAACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGGCGATCGGATTGTACT 9460874 Query 160801 TCTACCCCATTTGGGAAGCTGCATCTCTT----------GATGAATGGCTCTACAATGGT 160850 | ||||| ||||| |||||||||||| || ||||| ||| | ||||||||| Sbjct 9460873 TTTACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAGTGGTTATACAATGGT 9460814 Query 160851 GGTCCTTAC 160859 ||||||||| Sbjct 9460813 GGTCCTTAC 9460805 >seq1 Length=33916305 Score = 102 bits (112), Expect = 9e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 || || |||||||| ||||||||||| | ||| || || ||||| || ||||| ||| Sbjct 8033871 TGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGC 8033813 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 |||||||||||||| | |||||| ||||| | | | | ||| | | || ||| | || Sbjct 8033812 TGTTGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGG 8033753 Query 161015 TCAAGGTTCTTTCTCTGATGGTATG 161039 |||||| |||||||||||||||| Sbjct 8033752 TCAAGGAAGTTTCTCTGATGGTATG 8033728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559310583924400