Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq9751 495 7e-138
seq20876 150 3e-34
seq9644 111 3e-22
>seq9751
Length=7809
Score = 495 bits (548), Expect = 7e-138
Identities = 299/314 (95%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 2123 TGGTTCGGCCGGGCCTTTCCCTCTGGGGAACCGCATGCCCTTCACTGGGTGTGTCGGGGA 2182
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2183 ACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 2242
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2243 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2302
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2303 AATGATTAATAGGGACAGTCGGGGGCGTCAGTATTCCATTGTCAGAGGTGAAATTCTTGG 2362
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 2363 ATTTATGGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAG-GA 2421
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 2422 ACGAAAGTTAGGGG 2435
>seq20876
Length=46245
Score = 150 bits (166), Expect = 3e-34
Identities = 135/168 (80%), Gaps = 5/168 (3%)
Strand=Plus/Plus
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||| |||||| | ||| || |||||||||||||||||||||||| || |
Sbjct 25389 TTCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGATAGTCGGAGGCATTT 25448
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || |||||||||||||||||| ||||||| ||||| ||| ||| |||||||
Sbjct 25449 GTATTTCATGGTCAGAGGTGAAATTCTTAGATTTATGAAAGACGAACAACTACGAAAGCA 25508
Query 275 TTCACCAAGGATG----TTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| ||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 25509 TTTGCCAAGGATGTTAATTTTCATTAATCA-AGAACGAAAGTTTGGGG 25555
>seq9644
Length=3249
Score = 111 bits (122), Expect = 3e-22
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 2755 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCA 2814
Query 275 TTCACCAAGGATGTTTTCATTAATCA 300
|| ||||||||||||||||||||||
Sbjct 2815 TTTGCCAAGGATGTTTTCATTAATCA 2840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914965717952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |