Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9751 495 7e-138 seq20876 150 3e-34 seq9644 111 3e-22 >seq9751 Length=7809 Score = 495 bits (548), Expect = 7e-138 Identities = 299/314 (95%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 2123 TGGTTCGGCCGGGCCTTTCCCTCTGGGGAACCGCATGCCCTTCACTGGGTGTGTCGGGGA 2182 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2183 ACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 2242 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2243 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2302 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 2303 AATGATTAATAGGGACAGTCGGGGGCGTCAGTATTCCATTGTCAGAGGTGAAATTCTTGG 2362 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| || Sbjct 2363 ATTTATGGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAG-GA 2421 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 2422 ACGAAAGTTAGGGG 2435 >seq20876 Length=46245 Score = 150 bits (166), Expect = 3e-34 Identities = 135/168 (80%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||| |||||| | ||| || |||||||||||||||||||||||| || | Sbjct 25389 TTCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGATAGTCGGAGGCATTT 25448 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||| ||||||| ||||| ||| ||| ||||||| Sbjct 25449 GTATTTCATGGTCAGAGGTGAAATTCTTAGATTTATGAAAGACGAACAACTACGAAAGCA 25508 Query 275 TTCACCAAGGATG----TTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||| ||||||||||||| ||||||||||| |||| Sbjct 25509 TTTGCCAAGGATGTTAATTTTCATTAATCA-AGAACGAAAGTTTGGGG 25555 >seq9644 Length=3249 Score = 111 bits (122), Expect = 3e-22 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 2755 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCA 2814 Query 275 TTCACCAAGGATGTTTTCATTAATCA 300 || |||||||||||||||||||||| Sbjct 2815 TTTGCCAAGGATGTTTTCATTAATCA 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914965717952