Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq9751 713 0.0
seq14722 152 2e-34
seq12810 145 3e-32
>seq9751
Length=7809
Score = 713 bits (790), Expect = 0.0
Identities = 569/676 (84%), Gaps = 14/676 (2%)
Strand=Plus/Plus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
|||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3943 GCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 4002
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4003 GGAGGTATATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGT 4062
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 4063 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAG 4122
Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCAC 251
||||||| || ||||||||| | | | ||| |||| ||| |||||||||
Sbjct 4123 GGAAGCGTTTATCACCAGACTTTTTCTAGGGGGATCATCCGGTGTTCTCA-CCGGTGCAC 4181
Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTG 309
| | | | ||||||||||| | | ||| || ||||||| | ||||||||||
Sbjct 4182 TTCCCCTAGTTGAGGCCAGCATCGGTTTTCGGAGGG--GGATAAAAGTTTCGGGAATGTG 4239
Query 310 GCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG--ACTGAGGTC 367
| ||| | ||| ||||||||||||| ||| | || |||| || |||||
Sbjct 4240 ACTCCC--CCGGGAGTGTTATAGCCCGTTACATAATAC---CCTTCTGGGGACCGAGGTT 4294
Query 368 CGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACC 427
||||| | || ||||||||||| ||||||| | | || ||||||||| ||||||||||
Sbjct 4295 CGCGCATCTGCAAGGATGCTGGCATAATGGTGATCAACGACCCGTCTTGAAACACGGACC 4354
Query 428 AAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA 487
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4355 AAGGAGTCGAACATTTATGCGAGTGTTTGGGTGTCAAACCCTCACGCGTAATGAAAGTGA 4414
Query 488 ACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATT 547
||||||||| || ||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 4415 ACGGAGGTGAGAGCCCTTACGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATT 4474
Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
|||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 4475 TGAGTAAGAGCATAACTGTTCGGACCCGAAAGATGGTGAACTATGCGTGGATAGGGTGAA 4534
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 4535 GCCAGGAGAAATCCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAAT 4594
Query 668 TTGGGTATAGGGGCGA 683
|| | || |||||||
Sbjct 4595 CTGCGCATGGGGGCGA 4610
>seq14722
Length=2239
Score = 152 bits (168), Expect = 2e-34
Identities = 198/270 (73%), Gaps = 3/270 (1%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| || |||||||||||||||| |||| ||| ||| |||| | |
Sbjct 1678 CGACCCGTCTTGAAATACGGACCAAGGAGTCTGACATGCGTGCAAGTCAACGGGTTCTGA 1619
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
|||| | | ||| || ||| ||| | || || | || | || ||||| | |
Sbjct 1618 AACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGCG-GGCCGCACCGCTGGC 1560
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
| | |||||| | | || || || |||| ||||| || | |||||||||||||||
Sbjct 1559 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCGAAAGATG 1500
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
| ||||||||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 1499 GCGAACTATGCCTGAGCGCGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 1440
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGG 672
||| |||||||||| ||||| | |||||
Sbjct 1439 CTGACGTGCAAATCATTCGTCTGACTTGGG 1410
>seq12810
Length=20244
Score = 145 bits (160), Expect = 3e-32
Identities = 209/285 (73%), Gaps = 11/285 (4%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| |||||||||||||||||| |||| | |||| |||| |
Sbjct 7049 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGACGACGGGTTCTGG 6990
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
|||| | | | | || ||| ||| ||| || || || | | ||| ||||| ||
Sbjct 6989 AACCTGGGATGTGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 6933
Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578
|||| ||| || |||| | | || ||||||| ||||| |||| ||||||||||
Sbjct 6932 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAC 6875
Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638
|||||| ||||| |||||| || ||||||| |||||||||||||||||||||| |||
Sbjct 6874 GATGGTCAACTAAGCCTGAGCGAGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 6815
Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| | ||| |||||||||| | ||| | |||||||||||| |||
Sbjct 6814 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGGCCGA 6770
Score = 114 bits (126), Expect = 5e-23
Identities = 192/272 (71%), Gaps = 8/272 (3%)
Strand=Plus/Plus
Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCG- 469
||||| ||||||||||| ||||||| |||| |||||||| |||| | ||||| |
Sbjct 6185 TCTTGAAACACGGACCACGGAGTCTGACATGCATGCGAGTCGACGGGTTTTGAAACCTGG 6244
Query 470 --TGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527
| ||| || ||| ||| | || || | || | || ||| | ||| |
Sbjct 6245 AATACGC--AAGGAATCTGACAAGTGGCAGGCCCTCGCG-GGCCATACCTCTGGCCGC-C 6300
Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587
||||| | | || || || || | ||||| ||| ||||||||||||||||||||
Sbjct 6301 CTGATCTTCTGTGAAGGGTTCGAATTGGAGCACGCATGTCGGGACCCGAAAGATGGTGAA 6360
Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647
||||| ||| ||| ||| ||||||||| ||| |||||||||| |||| | ||| |
Sbjct 6361 TTATGCTTGAGCGGGGCGAAATCAGAGGAAAATCTAATGGAGGCTCGAAGCGATACTGAC 6420
Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|| ||||||| | ||| | ||||||||||||
Sbjct 6421 GTACAAATCGTTTGTCTGACTTGGGTATAGGG 6452
Score = 98.7 bits (108), Expect = 4e-18
Identities = 118/159 (74%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84
||| || || || ||||| | |||||||||||||||| | || ||| |||||| |
Sbjct 5806 TGAGGCGCCGTCAACGAGATTGGATGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 5865
Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144
| || || |||||||| | | ||||| ||||||| ||||| | || ||||||||
Sbjct 5866 CGTCCAAGGCTAAATACAG-CGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 5924
Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183
|||| || ||| ||||||||| |||||| | ||||||
Sbjct 5925 AAAATGACATTGAAAAGAGAGTCAAAAAGTGCTTGAAAT 5963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079450901450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |