Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9751 713 0.0 seq14722 152 2e-34 seq12810 145 3e-32 >seq9751 Length=7809 Score = 713 bits (790), Expect = 0.0 Identities = 569/676 (84%), Gaps = 14/676 (2%) Strand=Plus/Plus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 |||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 3943 GCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 4002 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4003 GGAGGTATATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGT 4062 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| Sbjct 4063 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAG 4122 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCAC 251 ||||||| || ||||||||| | | | ||| |||| ||| ||||||||| Sbjct 4123 GGAAGCGTTTATCACCAGACTTTTTCTAGGGGGATCATCCGGTGTTCTCA-CCGGTGCAC 4181 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTG 309 | | | | ||||||||||| | | ||| || ||||||| | |||||||||| Sbjct 4182 TTCCCCTAGTTGAGGCCAGCATCGGTTTTCGGAGGG--GGATAAAAGTTTCGGGAATGTG 4239 Query 310 GCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG--ACTGAGGTC 367 | ||| | ||| ||||||||||||| ||| | || |||| || ||||| Sbjct 4240 ACTCCC--CCGGGAGTGTTATAGCCCGTTACATAATAC---CCTTCTGGGGACCGAGGTT 4294 Query 368 CGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACC 427 ||||| | || ||||||||||| ||||||| | | || ||||||||| |||||||||| Sbjct 4295 CGCGCATCTGCAAGGATGCTGGCATAATGGTGATCAACGACCCGTCTTGAAACACGGACC 4354 Query 428 AAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA 487 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 4355 AAGGAGTCGAACATTTATGCGAGTGTTTGGGTGTCAAACCCTCACGCGTAATGAAAGTGA 4414 Query 488 ACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATT 547 ||||||||| || ||| | ||||||| |||||||||||||||||||||||||||||||| Sbjct 4415 ACGGAGGTGAGAGCCCTTACGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATT 4474 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 |||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||| Sbjct 4475 TGAGTAAGAGCATAACTGTTCGGACCCGAAAGATGGTGAACTATGCGTGGATAGGGTGAA 4534 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4535 GCCAGGAGAAATCCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAAT 4594 Query 668 TTGGGTATAGGGGCGA 683 || | || ||||||| Sbjct 4595 CTGCGCATGGGGGCGA 4610 >seq14722 Length=2239 Score = 152 bits (168), Expect = 2e-34 Identities = 198/270 (73%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| || |||||||||||||||| |||| ||| ||| |||| | | Sbjct 1678 CGACCCGTCTTGAAATACGGACCAAGGAGTCTGACATGCGTGCAAGTCAACGGGTTCTGA 1619 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 |||| | | ||| || ||| ||| | || || | || | || ||||| | | Sbjct 1618 AACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGCG-GGCCGCACCGCTGGC 1560 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | |||||| | | || || || |||| ||||| || | ||||||||||||||| Sbjct 1559 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCGAAAGATG 1500 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 | ||||||||||||| || |||||||||||||||||||||||||||||| |||| | Sbjct 1499 GCGAACTATGCCTGAGCGCGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 1440 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||| |||||||||| ||||| | ||||| Sbjct 1439 CTGACGTGCAAATCATTCGTCTGACTTGGG 1410 >seq12810 Length=20244 Score = 145 bits (160), Expect = 3e-32 Identities = 209/285 (73%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| |||||||||||||||||| |||| | |||| |||| | Sbjct 7049 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGACGACGGGTTCTGG 6990 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | | | || ||| ||| ||| || || || | | ||| ||||| || Sbjct 6989 AACCTGGGATGTGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 6933 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| ||| || |||| | | || ||||||| ||||| |||| |||||||||| Sbjct 6932 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAC 6875 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||| ||||| |||||| || ||||||| |||||||||||||||||||||| ||| Sbjct 6874 GATGGTCAACTAAGCCTGAGCGAGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 6815 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| |||||||||| | ||| | |||||||||||| ||| Sbjct 6814 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGGCCGA 6770 Score = 114 bits (126), Expect = 5e-23 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCG- 469 ||||| ||||||||||| ||||||| |||| |||||||| |||| | ||||| | Sbjct 6185 TCTTGAAACACGGACCACGGAGTCTGACATGCATGCGAGTCGACGGGTTTTGAAACCTGG 6244 Query 470 --TGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | ||| || ||| ||| | || || | || | || ||| | ||| | Sbjct 6245 AATACGC--AAGGAATCTGACAAGTGGCAGGCCCTCGCG-GGCCATACCTCTGGCCGC-C 6300 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 ||||| | | || || || || | ||||| ||| |||||||||||||||||||| Sbjct 6301 CTGATCTTCTGTGAAGGGTTCGAATTGGAGCACGCATGTCGGGACCCGAAAGATGGTGAA 6360 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||| ||| ||| ||| ||||||||| ||| |||||||||| |||| | ||| | Sbjct 6361 TTATGCTTGAGCGGGGCGAAATCAGAGGAAAATCTAATGGAGGCTCGAAGCGATACTGAC 6420 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || ||||||| | ||| | |||||||||||| Sbjct 6421 GTACAAATCGTTTGTCTGACTTGGGTATAGGG 6452 Score = 98.7 bits (108), Expect = 4e-18 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || || ||||| | |||||||||||||||| | || ||| |||||| | Sbjct 5806 TGAGGCGCCGTCAACGAGATTGGATGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 5865 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| | | ||||| ||||||| ||||| | || |||||||| Sbjct 5866 CGTCCAAGGCTAAATACAG-CGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 5924 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||| || ||| ||||||||| |||||| | |||||| Sbjct 5925 AAAATGACATTGAAAAGAGAGTCAAAAAGTGCTTGAAAT 5963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079450901450