Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq21247 87.8 2e-15
seq19772 87.8 2e-15
seq17831 87.8 2e-15
seq15625 87.8 2e-15
seq13637 87.8 2e-15
seq13488 87.8 2e-15
seq11525 87.8 2e-15
seq11453 87.8 2e-15
seq6234 87.8 2e-15
seq24875 86.0 6e-15
seq14000 86.0 6e-15
seq5989 84.2 2e-14
seq15160 77.0 3e-12
seq14496 77.0 3e-12
>seq21247
Length=24338
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 19992 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 20051
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 20052 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 20097
>seq19772
Length=18710
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 14363 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 14422
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 14423 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 14468
>seq17831
Length=3973
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 2103 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 2162
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 2163 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2208
>seq15625
Length=23200
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 16456 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 16515
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 16516 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 16561
>seq13637
Length=2250
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 1930 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 1989
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 1990 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2035
>seq13488
Length=6934
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 6301 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 6360
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 6361 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 6406
>seq11525
Length=6548
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 2201 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 2260
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 2261 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2306
>seq11453
Length=18929
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 16729 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 16670
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 16669 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 16624
>seq6234
Length=45946
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 14455 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 14396
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 14395 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 14350
>seq24875
Length=9158
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||| |||||||||||||||| ||||||| || | || ||
Sbjct 439 ATACCAGGGGGTAGCGACTATTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 380
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 379 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 345
>seq14000
Length=1554
Score = 86.0 bits (94), Expect = 6e-15
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||||||||||||||| ||||||| || | || || |||||| || |||
Sbjct 1343 GCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGA 1402
Query 128 CGCCTGCCCGGTGCCGGAAGGT 149
| |||||||||||| |||||||
Sbjct 1403 CACCTGCCCGGTGCTGGAAGGT 1424
>seq5989
Length=102438
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| |
Sbjct 4767 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCAT 4826
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 4827 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 4872
>seq15160
Length=41511
Score = 77.0 bits (84), Expect = 3e-12
Identities = 74/95 (78%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||| |||||||||||||||| | ||||| || | || ||
Sbjct 16756 ATACCAGGGGGTAGCGACTATTTATTAAAAACACAGGATTCTGCTAAGTGGTAACACGAT 16815
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || | || |||||||||||| |||||||
Sbjct 16816 GTATAGAGTCTAACACCTGCCCGGTGCTGGAAGGT 16850
>seq14496
Length=4682
Score = 77.0 bits (84), Expect = 3e-12
Identities = 74/95 (78%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|| ||||| | |||||||||||||||||||||| ||||||| || | || ||
Sbjct 3465 ATTCCAGGGGGTAGCGACTGTTTATTAAAAACACAAGACTCTGCTAAGTGGTAACACGAT 3406
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || | || |||||||||||| |||||||
Sbjct 3405 GTATAGAGTCTAACACCTGCCCGGTGCTGGAAGGT 3371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476681758219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |