Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9751 342 8e-92 seq9644 150 3e-34 >seq9751 Length=7809 Score = 342 bits (378), Expect = 8e-92 Identities = 233/258 (90%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2935 ACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2876 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| |||||||||| ||| || || |||||||||||||||||||||| Sbjct 2875 CCTGTTATTGCCTAAAACTTCCATCCGCTTGA-GCGGATAGTCCCTCTAAGAAGCCAGCG 2817 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || | || ||||||||||| |||||||||||||||||||||||| ||||| Sbjct 2816 TACTGCCAAAG-CAATACGGGCTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTA 2758 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2757 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 2698 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 2697 AAGAGCTCTCAATCTGTC 2680 >seq9644 Length=3249 Score = 150 bits (166), Expect = 3e-34 Identities = 98/108 (91%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| | ||||||||||||||| || ||||||||||||||||| ||||||||||||| || Sbjct 3206 AGGCTGAGGTCTCGTTCGTTAACGAAATTAACCAGACAAATCGCTCCACCAACTAAAAAT 3147 Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||| ||| ||| || Sbjct 3146 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTATC 3099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796602401319