Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq9751 479 5e-133
seq1272 98.7 2e-18
seq23755 73.4 7e-11
seq21247 73.4 7e-11
seq19772 73.4 7e-11
seq17831 73.4 7e-11
seq15625 73.4 7e-11
seq11525 73.4 7e-11
seq11453 73.4 7e-11
seq6234 73.4 7e-11
seq3587 73.4 7e-11
seq811 73.4 7e-11
>seq9751
Length=7809
Score = 479 bits (530), Expect = 5e-133
Identities = 284/295 (96%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 6698 TACTAAGCTCAATTACCATTGCGGTGT-GATCATCAGTAGGGTAAAACTAACCTGTCTCA 6640
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6639 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 6580
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 6579 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 6520
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6519 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 6460
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6459 CATATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 6405
>seq1272
Length=79350
Score = 98.7 bits (108), Expect = 2e-18
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135
||||||||||||||||| ||| ||||| ||| | | ||| ||| | ||||| ||
Sbjct 41421 AGCTCACGTTCCCTATTGGTGTGTGAATAATTCGAAACTTGATGAACTTTGCTTTAAAAT 41362
Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184
||||||||||||| ||||| |||||| |||||||||||| |||| |||
Sbjct 41361 GATAGGAAGAGCCAACATCAAAGGATAAAAAAGCAACGTACCTATCAAC 41313
>seq23755
Length=917
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 385 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 326
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 325 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 269
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 268 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 214
>seq21247
Length=24338
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 20852 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 20793
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 20792 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 20736
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 20735 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 20681
>seq19772
Length=18710
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 15223 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 15164
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 15163 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 15107
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 15106 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 15052
>seq17831
Length=3973
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 2963 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 2904
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 2903 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 2847
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 2846 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 2792
>seq15625
Length=23200
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 17316 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 17257
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 17256 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 17200
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 17199 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 17145
>seq11525
Length=6548
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 3061 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 3002
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 3001 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 2945
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 2944 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 2890
>seq11453
Length=18929
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 15869 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 15928
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 15929 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 15985
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 15986 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 16040
>seq6234
Length=45946
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 13596 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 13655
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 13656 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 13712
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 13713 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 13767
>seq3587
Length=1139
Score = 73.4 bits (80), Expect = 7e-11
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 772 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 713
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | || | ||||||||||||||| | ||||
Sbjct 712 CTTGGAACCACCTACAGCTCCAG-GTGGCA--AAGAGCCGACATCGAGGTGCCAAACCTT 656
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 655 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 601
>seq811
Length=550
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 292 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 233
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 232 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 176
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 175 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854181282144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |