Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq24875 107 2e-21
seq21247 107 2e-21
seq19772 107 2e-21
seq17831 107 2e-21
seq15625 107 2e-21
seq13637 107 2e-21
seq13488 107 2e-21
seq11525 107 2e-21
seq11453 107 2e-21
seq6234 107 2e-21
seq14496 104 3e-20
seq3587 100 3e-19
seq10059 96.9 4e-18
seq6760 96.9 4e-18
seq5989 96.9 4e-18
seq12419 82.4 8e-14
>seq24875
Length=9158
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 135 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 194
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 195 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 254
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 255 GACAAGGAATTTCGCTACCTTAGGACAGTTA 285
>seq21247
Length=24338
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 20312 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 20253
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 20252 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 20194
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 20193 ACAAGGAATTTCGCTACCTTAGGACCGTTA 20164
>seq19772
Length=18710
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 14683 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 14624
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 14623 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 14565
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 14564 ACAAGGAATTTCGCTACCTTAGGACCGTTA 14535
>seq17831
Length=3973
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 2423 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 2364
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 2363 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 2305
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 2304 ACAAGGAATTTCGCTACCTTAGGACCGTTA 2275
>seq15625
Length=23200
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 16776 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 16717
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 16716 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 16658
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 16657 ACAAGGAATTTCGCTACCTTAGGACCGTTA 16628
>seq13637
Length=2250
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 2250 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 2191
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 2190 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 2132
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 2131 ACAAGGAATTTCGCTACCTTAGGACCGTTA 2102
>seq13488
Length=6934
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 6621 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 6562
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 6561 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 6503
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 6502 ACAAGGAATTTCGCTACCTTAGGACCGTTA 6473
>seq11525
Length=6548
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 2521 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 2462
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 2461 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 2403
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 2402 ACAAGGAATTTCGCTACCTTAGGACCGTTA 2373
>seq11453
Length=18929
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 16409 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 16468
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 16469 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 16527
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 16528 ACAAGGAATTTCGCTACCTTAGGACCGTTA 16557
>seq6234
Length=45946
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 14135 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 14194
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 14195 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 14253
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 14254 ACAAGGAATTTCGCTACCTTAGGACCGTTA 14283
>seq14496
Length=4682
Score = 104 bits (114), Expect = 3e-20
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 3161 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 3220
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| ||||||||||||||||| || ||||| |
Sbjct 3221 GGTCCATGTCGGAGACAGCGGGGTAGTCGTTACACCATTCGTGCAGGCCGCTACTTATGC 3280
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 3281 GACAAGGAATTTCGCTACCTTAGGACAGTTA 3311
>seq3587
Length=1139
Score = 100 bits (110), Expect = 3e-19
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85
||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 231 GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG- 173
Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| ||| || ||||||| |||||||||||||||||
Sbjct 172 TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGA 113
Query 145 CAAGGAATTTCGCTACCTTAGGACCG 170
||||||||||||||||||||||||||
Sbjct 112 CAAGGAATTTCGCTACCTTAGGACCG 87
>seq10059
Length=53196
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 30808 TACGCCTTTCGTGCAGGTCGGAACTTACTCGACAAGGAATTTCGCTACCTTAGGACCGTT 30749
Query 173 A 173
|
Sbjct 30748 A 30748
>seq6760
Length=11880
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7748 TACACCTTTCTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 7689
Query 173 A 173
|
Sbjct 7688 A 7688
>seq5989
Length=102438
Score = 96.9 bits (106), Expect = 4e-18
Identities = 98/129 (76%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNN 104
|||| || |||||||||| || | | ||||||| ||| || | | |||||||
Sbjct 5066 GGTATTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCCGAGACAGTGCC 5008
Query 105 NNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164
||| || ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 5007 CAGATCGTTACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 4948
Query 165 GGACCGTTA 173
|||||||||
Sbjct 4947 GGACCGTTA 4939
>seq12419
Length=33337
Score = 82.4 bits (90), Expect = 8e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 170
|||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3756 TACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 3699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547064299701
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |