Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq23612 118 9e-25
seq7029 118 9e-25
seq7811 114 1e-23
seq21247 100 2e-19
seq19772 100 2e-19
seq19684 100 2e-19
seq17860 100 2e-19
seq15625 100 2e-19
seq14608 100 2e-19
seq13488 100 2e-19
seq11769 100 2e-19
seq11552 100 2e-19
seq11457 100 2e-19
seq6234 100 2e-19
seq16364 91.5 1e-16
seq12684 86.0 5e-15
>seq23612
Length=8524
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 4935 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 4877
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 4876 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 4817
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 4816 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 4777
>seq7029
Length=18141
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| ||||||| |||| | | ||||| || ||| ||||| ||| | |
Sbjct 15280 CGAGTTGCAGAGAACAATCCTAACTAAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 15222
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 15221 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 15162
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 15161 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 15122
>seq7811
Length=8338
Score = 114 bits (126), Expect = 1e-23
Identities = 122/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| | ||| ||||| ||| | |
Sbjct 5753 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGA-ATTCGCTCCGCCTTACAG 5811
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 5812 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 5871
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 5872 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 5911
>seq21247
Length=24338
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 15509 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 15450
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 15449 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 15390
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 15389 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 15355
>seq19772
Length=18710
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 9879 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 9820
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 9819 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 9760
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 9759 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 9725
>seq19684
Length=2096
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 1773 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 1714
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1713 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1654
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 1653 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 1619
>seq17860
Length=2587
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 1814 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 1755
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1754 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1695
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 1694 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 1660
>seq15625
Length=23200
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 11973 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 11914
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 11913 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 11854
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 11853 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 11819
>seq14608
Length=2295
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 650 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 709
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 710 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 769
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 770 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 804
>seq13488
Length=6934
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 1819 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 1760
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1759 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1700
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 1699 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 1665
>seq11769
Length=2637
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 355 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 296
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 295 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 236
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 235 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 201
>seq11552
Length=2638
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 356 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 297
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 296 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 237
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 236 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 202
>seq11457
Length=2637
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 355 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 296
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 295 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 236
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 235 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 201
>seq6234
Length=45946
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 18939 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 18998
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 18999 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 19058
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 19059 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 19093
>seq16364
Length=23816
Score = 91.5 bits (100), Expect = 1e-16
Identities = 108/145 (74%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||||||| ||||||| | | | | ||||| || ||| ||||| ||| | |
Sbjct 13303 GAGTTGCAGAGAACAATCCAAATTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAGC 13361
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| || ||| ||| | | |||||| ||||||| |||| |||||||||||||||
Sbjct 13362 CTTGCTTCCCATTGTCATTGCAATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATG 13421
Query 123 AGGACTTGACGTCATCCCCACCTTC 147
||||||||||||||||||||||||
Sbjct 13422 CGGACTTGACGTCATCCCCACCTTC 13446
>seq12684
Length=4029
Score = 86.0 bits (94), Expect = 5e-15
Identities = 117/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||| | | ||| || ||| | | ||||| || ||| |||| ||| | |
Sbjct 1073 CGAGTTGCATAGAATAATTCGAACTGAGGCAATCTTTCCGG-ATTTGCTCTGCCTTACAG 1015
Query 62 GTTGGCGGCCCTCTGTATGTACCAT-TGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || ||| ||| | |||| ||| ||||||| |||| |||||||| ||||
Sbjct 1014 CCTTGCTTCCCATTGTCATTGCCATATGTCGCACGTGTGTGGCCCAGCCCATAAGTGCCA 955
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| |||||||||||||||||||||||||||| || | ||||
Sbjct 954 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415896836030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |