Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq23755 87.8 1e-15
seq21247 87.8 1e-15
seq19772 87.8 1e-15
seq17831 87.8 1e-15
seq15625 87.8 1e-15
seq11525 87.8 1e-15
seq11453 87.8 1e-15
seq6234 87.8 1e-15
seq811 87.8 1e-15
seq5989 84.2 2e-14
seq12651 82.4 5e-14
seq3587 82.4 5e-14
>seq23755
Length=917
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 221 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 162
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 161 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 104
>seq21247
Length=24338
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 20688 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 20629
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 20628 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 20571
>seq19772
Length=18710
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 15059 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 15000
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 14999 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 14942
>seq17831
Length=3973
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 2799 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 2740
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 2739 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 2682
>seq15625
Length=23200
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 17152 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 17093
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 17092 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 17035
>seq11525
Length=6548
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 2897 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 2838
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 2837 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 2780
>seq11453
Length=18929
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 16033 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 16092
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 16093 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 16150
>seq6234
Length=45946
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 13760 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 13819
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 13820 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 13877
>seq811
Length=550
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 128 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 69
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 68 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 11
>seq5989
Length=102438
Score = 84.2 bits (92), Expect = 2e-14
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 5463 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 5404
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119
||||| ||||||| | || ||| ||| |||||| | ||| |||| ||||||||
Sbjct 5403 CTTTCATCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTA 5345
>seq12651
Length=51372
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 19270 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 19211
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| || |||||| | ||| |||| |||||||
Sbjct 19210 CTTTCGTCTCTGCTCGACGGGTGAGTCTTACAGTCAAGCTCCCTTCTGCCTTTGCACT 19153
>seq3587
Length=1139
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 608 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 549
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 548 CTTTCATCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351915523300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |