Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9751 792 0.0 seq14722 562 1e-157 seq6022 230 8e-58 seq12902 132 2e-28 seq5492 105 2e-20 seq24875 78.8 3e-12 >seq9751 Length=7809 Score = 792 bits (878), Expect = 0.0 Identities = 499/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 6373 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 6314 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 6313 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 6254 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| | || |||| |||||||||||| Sbjct 6253 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGAAGA--AAATCCAGCCCCGCTTCATTGA 6196 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 6195 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 6139 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 6138 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 6079 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6078 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 6019 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6018 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 5959 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 5958 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 5899 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5898 TCACTTTGACATTCTGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 5842 >seq14722 Length=2239 Score = 562 bits (622), Expect = 1e-157 Identities = 336/351 (96%), Gaps = 1/351 (0%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||||||| | | |||||||||| Sbjct 83 GAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCTGGAG-GGCTCCCACT 141 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 TATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 201 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 202 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGA 261 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 262 CAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 321 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 381 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 382 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 432 >seq6022 Length=17457517 Score = 230 bits (254), Expect = 8e-58 Identities = 130/132 (98%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16470516 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 16470575 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 16470576 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTAGGCAGAAATCACAT 16470635 Query 524 TGCGTCAACATC 535 ||||||| |||| Sbjct 16470636 TGCGTCAGCATC 16470647 >seq12902 Length=25657 Score = 132 bits (146), Expect = 2e-28 Identities = 166/221 (75%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTC-TTCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGG 341 || || || || |||||| |||||||| ||||||||||| |||| | | || | | | Sbjct 2365 GTTAACCTTAATAGGGTCATTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCG 2306 Query 342 CTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 | || ||||||| ||||||||| || |||| || || ||| ||||||| |||||| || Sbjct 2305 CCGTTGGTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCATACG 2246 Query 401 CGTCACTAATTAGAT--GACGAGGCATTTGGCTACCTTA-AGAGAGTC-ATAGTTACTCC 456 ||||| |||||||| || ||| |||||| || |||| | | || ||||||||||| Sbjct 2245 TGTCACAAATTAGATAAGATAAGGTATTTGGTTATCTTATAAATCGTTTATAGTTACTCC 2186 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||| | || || | ||||| |||| ||| ||| Sbjct 2185 TGCCGTTTACGCACGGTTCATCAAATTTATTCATTTTAACA 2145 >seq5492 Length=25734 Score = 105 bits (116), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || |||| ||| ||| || ||||||||||| | | | |||| ||||||||| ||||| Sbjct 12752 AATAACGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTTCCACTTATTTTACAC 12810 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 ||||||| | | | | |||| || || |||||||||||| || |||||| || | Sbjct 12811 CTCTCAAATAAGCTTATGAAGTTGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 12867 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 ||||||| | ||||||| || |||| |||||||||| Sbjct 12868 CTGATTCTGTCAAGCCCATT-CCTTAGCTGTGGTTT 12902 >seq24875 Length=9158 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 208 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 267 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 268 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634781405152