Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq9751 235 9e-60 >seq9751 Length=7809 Score = 235 bits (260), Expect = 9e-60 Identities = 226/283 (80%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 6696 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6753 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6754 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6813 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||| || |||| ||| | |||| |||||||||||||||| ||||| || | Sbjct 6814 GAACGCGGTG-TTACCTCCCACACGTTGTAGACGGATACGAATAGGCTCCGGCCTCGCAT 6872 Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235 |||||| || || || ||| | || ||| | || | | | | ||| | Sbjct 6873 CTTAGCTGGCGATTCCTCCATCGGAC-TC-----GAAATGTCCGGTGGT-ATTTCGCGTA 6925 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||| | || ||| || ||||||||||||||||||| Sbjct 6926 TTGTAATTTAAGCACGCGTGGGATTAAATCCTTTGCAGACGAC 6968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818996846336