Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22]
25,599 sequences; 303,294,962 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq9751 235 9e-60
>seq9751
Length=7809
Score = 235 bits (260), Expect = 9e-60
Identities = 226/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 6696 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6753
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6754 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6813
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||| || |||| ||| | |||| |||||||||||||||| ||||| || |
Sbjct 6814 GAACGCGGTG-TTACCTCCCACACGTTGTAGACGGATACGAATAGGCTCCGGCCTCGCAT 6872
Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235
|||||| || || || ||| | || ||| | || | | | | ||| |
Sbjct 6873 CTTAGCTGGCGATTCCTCCATCGGAC-TC-----GAAATGTCCGGTGGT-ATTTCGCGTA 6925
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||| | || ||| || |||||||||||||||||||
Sbjct 6926 TTGTAATTTAAGCACGCGTGGGATTAAATCCTTTGCAGACGAC 6968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818996846336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |