Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq1 80.6 5e-13
>seq1
Length=46529941
Score = 80.6 bits (88), Expect = 5e-13
Identities = 210/312 (67%), Gaps = 14/312 (4%)
Strand=Plus/Plus
Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71
|||||||||| | |||| ||| || || ||||| || |||| || ||||| |
Sbjct 25048331 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 25048389
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 25048390 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 25048448
Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | | | ||||| || ||||||||| ||| | ||||||| | | ||
Sbjct 25048449 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATTA-TCACTGCTT 25048507
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| | | | ||| |
Sbjct 25048508 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 25048567
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 25048568 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 25048625
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 25048626 TGCCACTCGAAC 25048637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972799883264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |