Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 185 4e-44 seq9 147 9e-33 >seq10 Length=28350858 Score = 185 bits (204), Expect = 4e-44 Identities = 212/281 (75%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| ||||| | | Sbjct 10301488 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCAATGGGTTCTGA 10301429 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 |||| | | ||| || ||| ||| | || || | |||| || ||||| | Sbjct 10301428 AACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGTG-GGCCGCACCGCTAGC 10301370 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | |||||| | | || || || |||| ||||| || | ||||||||||||||| Sbjct 10301369 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCGAAAGATG 10301310 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||| |||||||| || |||||||||||||||||||||||||||||| |||| | Sbjct 10301309 GTGAACGATGCCTGAGCGCGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 10301250 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||| ||||||||||| Sbjct 10301249 CTGACGTGCAAATCGTTCGTCTGACTTGGATATAGGGGCGA 10301209 >seq9 Length=31548187 Score = 147 bits (162), Expect = 9e-33 Identities = 207/281 (74%), Gaps = 11/281 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| |||| ||||||||||||| |||| | ||||| |||| | Sbjct 8924052 CGACCCGTCTTGAGACACTGACCAAGGAGTCTGACATGCCTACGAGTCGACGGGTTCTGG 8923993 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | ||| || ||| ||| ||| || || || | | ||| ||||| || Sbjct 8923992 AACCTGGGATGCGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 8923936 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| ||| || |||| | | || ||||||| ||||| |||| ||||||||| Sbjct 8923935 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCAGGACCCGAAC 8923878 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||| ||||| |||||| ||| ||||||| |||||||||||||||||||||| ||| Sbjct 8923877 GATGGTCAACTAAGCCTGAGCGGGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 8923818 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | | ||| |||||||||| | ||| | |||||||||||| Sbjct 8923817 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGG 8923777 Score = 109 bits (120), Expect = 2e-21 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || || |||| ||||| |||| ||||||| |||||||||||| ||||| ||| Sbjct 8923320 GAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCAAAAGATGGTGAATTATGCTTGAGG 8923379 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||| ||||||||| ||| |||||||||| |||| | ||| ||| |||||| | Sbjct 8923380 GGGGCGAAGTCAGAGGAAAATCTAATGGAGGCTCGAAGCGATACTGACGTAGAAATCGTT 8923439 Query 660 CGTCAAATTTGGGTATAGGG 679 || | |||||||||||| Sbjct 8923440 TGTTTGACTTGGGTATAGGG 8923459 Score = 104 bits (114), Expect = 1e-19 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || || ||||| | |||||||||||||||||| | || ||| |||||| | Sbjct 8922814 TGAGGCGCCGTCAACGAGATGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 8922873 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| || ||||| ||||||| ||||| | || |||||||| Sbjct 8922874 CATCCAAGGCTAAATA-CAGCGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 8922932 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||| || ||| ||||||||| ||| || | |||||| Sbjct 8922933 AAAATGACATTGAAAAGAGAGTCAAAGAGTGCTTGAAAT 8922971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999742600