Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq10 185 4e-44
seq9 147 9e-33
>seq10
Length=28350858
Score = 185 bits (204), Expect = 4e-44
Identities = 212/281 (75%), Gaps = 3/281 (1%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| ||||||||||||||||||| |||| ||||||| ||||| | |
Sbjct 10301488 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCAATGGGTTCTGA 10301429
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
|||| | | ||| || ||| ||| | || || | |||| || ||||| |
Sbjct 10301428 AACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGTG-GGCCGCACCGCTAGC 10301370
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
| | |||||| | | || || || |||| ||||| || | |||||||||||||||
Sbjct 10301369 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCGAAAGATG 10301310
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
|||||| |||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 10301309 GTGAACGATGCCTGAGCGCGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 10301250
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | |||| |||||||||||
Sbjct 10301249 CTGACGTGCAAATCGTTCGTCTGACTTGGATATAGGGGCGA 10301209
>seq9
Length=31548187
Score = 147 bits (162), Expect = 9e-33
Identities = 207/281 (74%), Gaps = 11/281 (4%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| |||| ||||||||||||| |||| | ||||| |||| |
Sbjct 8924052 CGACCCGTCTTGAGACACTGACCAAGGAGTCTGACATGCCTACGAGTCGACGGGTTCTGG 8923993
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
|||| | | ||| || ||| ||| ||| || || || | | ||| ||||| ||
Sbjct 8923992 AACCTGGGATGCGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 8923936
Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578
|||| ||| || |||| | | || ||||||| ||||| |||| |||||||||
Sbjct 8923935 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCAGGACCCGAAC 8923878
Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638
|||||| ||||| |||||| ||| ||||||| |||||||||||||||||||||| |||
Sbjct 8923877 GATGGTCAACTAAGCCTGAGCGGGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 8923818
Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
| | ||| |||||||||| | ||| | ||||||||||||
Sbjct 8923817 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGG 8923777
Score = 109 bits (120), Expect = 2e-21
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599
|| || || |||| ||||| |||| ||||||| |||||||||||| ||||| |||
Sbjct 8923320 GAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCAAAAGATGGTGAATTATGCTTGAGG 8923379
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
||| |||| ||||||||| ||| |||||||||| |||| | ||| ||| |||||| |
Sbjct 8923380 GGGGCGAAGTCAGAGGAAAATCTAATGGAGGCTCGAAGCGATACTGACGTAGAAATCGTT 8923439
Query 660 CGTCAAATTTGGGTATAGGG 679
|| | ||||||||||||
Sbjct 8923440 TGTTTGACTTGGGTATAGGG 8923459
Score = 104 bits (114), Expect = 1e-19
Identities = 119/159 (75%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84
||| || || || ||||| | |||||||||||||||||| | || ||| |||||| |
Sbjct 8922814 TGAGGCGCCGTCAACGAGATGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 8922873
Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144
| || || |||||||| || ||||| ||||||| ||||| | || ||||||||
Sbjct 8922874 CATCCAAGGCTAAATA-CAGCGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 8922932
Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183
|||| || ||| ||||||||| ||| || | ||||||
Sbjct 8922933 AAAATGACATTGAAAAGAGAGTCAAAGAGTGCTTGAAAT 8922971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079999742600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |