Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 2e-31
seq1 125 2e-26
>seq6
Length=37594838
Score = 141 bits (156), Expect = 2e-31
Identities = 134/171 (78%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226
||| ||||| | |||||| | |||||||| | ||||| ||||||| ||||||| | |
Sbjct 25575535 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAAGGGTGAAATCCGTAGATCTAT 25575594
Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286
| |||||| |||| |||||| |||| | ||||| || |||||| | ||||||
Sbjct 25575595 GAAGGAACGCCAAAAGCGAAGACAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 25575654
Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
| |||||||| |||| |||||||||||||||||||||| ||| ||||||||
Sbjct 25575655 CATGGGGAGCGAACACGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 25575705
Score = 87.8 bits (96), Expect = 5e-15
Identities = 81/102 (79%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGTGCAA 64
|| ||| |||| |||||||||| |||||||||||||||||||| || | |||| ||||
Sbjct 25575282 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGGGCAA 25575341
Query 65 GCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106
| ||| ||||||| ||| | ||||||| | | |||||||
Sbjct 25575342 GTGTTCTTCGGAATGACTAGTCGTAAAGGGCATGTAGGCGGT 25575383
>seq1
Length=46529941
Score = 125 bits (138), Expect = 2e-26
Identities = 111/139 (80%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 25530471 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 25530412
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | ||| | | ||
Sbjct 25530411 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 25530352
Query 123 GAAATCCCCGGGCTTAACC 141
||||||| ||||| ||||
Sbjct 25530351 CAAATCCCAGGGCTCAACC 25530333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289599845248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |