Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-31 seq1 125 2e-26 >seq6 Length=37594838 Score = 141 bits (156), Expect = 2e-31 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | ||||| ||||||| ||||||| | | Sbjct 25575535 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAAGGGTGAAATCCGTAGATCTAT 25575594 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| |||||| |||| | ||||| || |||||| | |||||| Sbjct 25575595 GAAGGAACGCCAAAAGCGAAGACAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 25575654 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| |||| |||||||||||||||||||||| ||| |||||||| Sbjct 25575655 CATGGGGAGCGAACACGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 25575705 Score = 87.8 bits (96), Expect = 5e-15 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGTGCAA 64 || ||| |||| |||||||||| |||||||||||||||||||| || | |||| |||| Sbjct 25575282 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGGGCAA 25575341 Query 65 GCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 | ||| ||||||| ||| | ||||||| | | ||||||| Sbjct 25575342 GTGTTCTTCGGAATGACTAGTCGTAAAGGGCATGTAGGCGGT 25575383 >seq1 Length=46529941 Score = 125 bits (138), Expect = 2e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 25530471 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 25530412 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 25530411 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 25530352 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 25530351 CAAATCCCAGGGCTCAACC 25530333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289599845248