Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5 140 5e-31 seq1 73.4 5e-11 >seq5 Length=38039368 Score = 140 bits (154), Expect = 5e-31 Identities = 176/243 (72%), Gaps = 18/243 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 803763 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 803705 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 803704 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 803658 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 803657 ---TTTGCGAGGGG-GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 803602 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || || ||| |||||||||||| |||||||||||||||| | Sbjct 803601 TAGAGAGAGTTGTCTCGCACCCCTAGGTATTCTCTACCGACCCACCTGTGTCGGTTTCGG 803542 Query 246 GTA 248 ||| Sbjct 803541 GTA 803539 >seq1 Length=46529941 Score = 73.4 bits (80), Expect = 5e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 3060601 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT 3060557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399919276