Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq5 140 5e-31
seq1 73.4 5e-11
>seq5
Length=38039368
Score = 140 bits (154), Expect = 5e-31
Identities = 176/243 (72%), Gaps = 18/243 (7%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 803763 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 803705
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 803704 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 803658
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| | || | |||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 803657 ---TTTGCGAGGGG-GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 803602
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || || ||| |||||||||||| |||||||||||||||| |
Sbjct 803601 TAGAGAGAGTTGTCTCGCACCCCTAGGTATTCTCTACCGACCCACCTGTGTCGGTTTCGG 803542
Query 246 GTA 248
|||
Sbjct 803541 GTA 803539
>seq1
Length=46529941
Score = 73.4 bits (80), Expect = 5e-11
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186
|||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3060601 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT 3060557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694399919276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |