Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq5 340 4e-91 seq9 120 6e-25 seq11 98.7 2e-18 seq1 93.3 9e-17 seq2 78.8 2e-12 >seq5 Length=38039368 Score = 340 bits (376), Expect = 4e-91 Identities = 289/354 (82%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 803953 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 803894 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803893 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 803834 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 803833 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTAGCCGGCTTCCCTGTCATCAGTTCACCA 803774 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 803773 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 803714 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTC 298 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 803713 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 803654 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 803653 CGAGGGGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 803600 >seq9 Length=31548187 Score = 120 bits (132), Expect = 6e-25 Identities = 166/234 (71%), Gaps = 30/234 (13%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| || |||||||| ||||| ||||| ||| ||||| |||||||||||| |||||||| Sbjct 13253469 GAGATAGAGCCCAAATTGTTACACCTTTTGTGTGGGTCAGAACTTACCCGATAAGGAATT 13253528 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 |||||||||||||| |||||||| || ||||||| |||| | || Sbjct 13253529 TCGCTACCTTAGGA---------------CCGCCGTTCACCGGGGCTTCAGTTGCCGACT 13253573 Query 167 TCGATTGCTCT-AACAGATC--------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAG 217 || || | | ||| || ||| || || | | || ||||| | |||| Sbjct 13253574 ----TTCCTGTCATCAGTTCTTTTAACTTTCTTGACTTTTCGGTACTGGGCAAGTATCAG 13253629 Query 218 CTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT--GGTAAACAG 269 ||| |||||| ||||||||||| || || || ||||||||| ||||||||| Sbjct 13253630 TTCCCATACATGATCTTGCGACTTTGCGGAGACATGTGTTTTTTAGGTAAACAG 13253683 >seq11 Length=27185770 Score = 98.7 bits (108), Expect = 2e-18 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 14632122 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 14632063 Query 67 ACGCCTTTCGTGCGGGTCGGAACT 90 |||||||||||||||||||||||| Sbjct 14632062 ACGCCTTTCGTGCGGGTCGGAACT 14632039 >seq1 Length=46529941 Score = 93.3 bits (102), Expect = 9e-17 Identities = 95/124 (77%), Gaps = 10/124 (8%) Strand=Plus/Minus Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGT 297 |||||||||| ||||||||||| |||||||||||| ||| | | ||| || | Sbjct 3060680 ACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTC 3060621 Query 298 C------ATAGACAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 | | ||| ||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 3060620 CTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTT 3060561 Query 348 CCTT 351 |||| Sbjct 3060560 CCTT 3060557 >seq2 Length=22967634 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 ||||| | ||| || ||| ||||||| || ||||||| ||||| || || |||||||| Sbjct 15283871 ACCTTTCGGCATTGGACAGCCGTCAGCCCCCATACATCATCTTGTGATTTTGCAGAAACT 15283930 Query 252 TGTGTTTTTGGTAAA--CAGTCGCT-TGGGCCTA 282 ||||||||||||||| |||| || ||||||| Sbjct 15283931 TGTGTTTTTGGTAAAAGGAGTCACTCAGGGCCTA 15283964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399872512