Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq5 340 4e-91
seq9 120 6e-25
seq11 98.7 2e-18
seq1 93.3 9e-17
seq2 78.8 2e-12
>seq5
Length=38039368
Score = 340 bits (376), Expect = 4e-91
Identities = 289/354 (82%), Gaps = 8/354 (2%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | ||||||||||||| ||||||
Sbjct 803953 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 803894
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803893 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 803834
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182
||||||||||||||||| || ||||||| || | ||||| | | || | ||
Sbjct 803833 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTAGCCGGCTTCCCTGTCATCAGTTCACCA 803774
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||||
Sbjct 803773 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 803714
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTC 298
|| || ||||||||||||||||||||||||| |||||| || ||||| || | |
Sbjct 803713 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 803654
Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
|| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 803653 CGAGGGGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 803600
>seq9
Length=31548187
Score = 120 bits (132), Expect = 6e-25
Identities = 166/234 (71%), Gaps = 30/234 (13%)
Strand=Plus/Plus
Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106
|||| || |||||||| ||||| ||||| ||| ||||| |||||||||||| ||||||||
Sbjct 13253469 GAGATAGAGCCCAAATTGTTACACCTTTTGTGTGGGTCAGAACTTACCCGATAAGGAATT 13253528
Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166
|||||||||||||| |||||||| || ||||||| |||| | ||
Sbjct 13253529 TCGCTACCTTAGGA---------------CCGCCGTTCACCGGGGCTTCAGTTGCCGACT 13253573
Query 167 TCGATTGCTCT-AACAGATC--------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAG 217
|| || | | ||| || ||| || || | | || ||||| | ||||
Sbjct 13253574 ----TTCCTGTCATCAGTTCTTTTAACTTTCTTGACTTTTCGGTACTGGGCAAGTATCAG 13253629
Query 218 CTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT--GGTAAACAG 269
||| |||||| ||||||||||| || || || ||||||||| |||||||||
Sbjct 13253630 TTCCCATACATGATCTTGCGACTTTGCGGAGACATGTGTTTTTTAGGTAAACAG 13253683
>seq11
Length=27185770
Score = 98.7 bits (108), Expect = 2e-18
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | ||||||||||||| ||||||
Sbjct 14632122 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 14632063
Query 67 ACGCCTTTCGTGCGGGTCGGAACT 90
||||||||||||||||||||||||
Sbjct 14632062 ACGCCTTTCGTGCGGGTCGGAACT 14632039
>seq1
Length=46529941
Score = 93.3 bits (102), Expect = 9e-17
Identities = 95/124 (77%), Gaps = 10/124 (8%)
Strand=Plus/Minus
Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGT 297
|||||||||| ||||||||||| |||||||||||| ||| | | ||| || |
Sbjct 3060680 ACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTC 3060621
Query 298 C------ATAGACAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347
| | ||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 3060620 CTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTT 3060561
Query 348 CCTT 351
||||
Sbjct 3060560 CCTT 3060557
>seq2
Length=22967634
Score = 78.8 bits (86), Expect = 2e-12
Identities = 75/94 (80%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251
||||| | ||| || ||| ||||||| || ||||||| ||||| || || ||||||||
Sbjct 15283871 ACCTTTCGGCATTGGACAGCCGTCAGCCCCCATACATCATCTTGTGATTTTGCAGAAACT 15283930
Query 252 TGTGTTTTTGGTAAA--CAGTCGCT-TGGGCCTA 282
||||||||||||||| |||| || |||||||
Sbjct 15283931 TGTGTTTTTGGTAAAAGGAGTCACTCAGGGCCTA 15283964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062399872512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |