Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq1 194 5e-47
seq6 192 2e-46
seq3 187 7e-45
seq5 143 8e-32
seq9 134 4e-29
seq11 107 6e-21
seq10 77.0 1e-11
seq4 77.0 1e-11
seq7 75.2 3e-11
>seq1
Length=46529941
Score = 194 bits (214), Expect = 5e-47
Identities = 193/249 (78%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 249 AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308
|||| || || || | ||| ||||||| || ||||||||||| | ||| || | |||
Sbjct 2333785 AGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGGGAGGATGAGGCCAA 2333844
Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368
|||||||||||||||| ||||| |||||||||||||||||| | ||||||||
Sbjct 2333845 GTCATCATGCCCCTTATACCCTGGGCAACACACGTGCTACAATGGGCGGGACAAAGGGTC 2333904
Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428
|||| ||||||| ||| || ||| ||| || |||||||||||||| || ||||
Sbjct 2333905 GCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGC 2333964
Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487
|||||| || ||||||| ||||||||||||||||| | |||| ||| | ||||||||
Sbjct 2333965 AACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAAT 2334024
Query 488 ACGTTCCCG 496
||||||||
Sbjct 2334025 CCGTTCCCG 2334033
Score = 194 bits (214), Expect = 5e-47
Identities = 193/249 (78%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 249 AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308
|||| || || || | ||| ||||||| || ||||||||||| | ||| || | |||
Sbjct 2350350 AGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGGGAGGATGAGGCCAA 2350409
Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368
|||||||||||||||| ||||| |||||||||||||||||| | ||||||||
Sbjct 2350410 GTCATCATGCCCCTTATACCCTGGGCAACACACGTGCTACAATGGGCGGGACAAAGGGTC 2350469
Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428
|||| ||||||| ||| || ||| ||| || |||||||||||||| || ||||
Sbjct 2350470 GCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGC 2350529
Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487
|||||| || ||||||| ||||||||||||||||| | |||| ||| | ||||||||
Sbjct 2350530 AACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAAT 2350589
Query 488 ACGTTCCCG 496
||||||||
Sbjct 2350590 CCGTTCCCG 2350598
>seq6
Length=37594838
Score = 192 bits (212), Expect = 2e-46
Identities = 187/237 (79%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 25576106 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 25576165
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385
||||| |||||||||||||||||| |||| |||| ||| ||| | | | |||
Sbjct 25576166 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 25576224
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| ||| || |||| | ||||||||||||||| ||||||||||| | ||||||
Sbjct 25576225 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 25576283
Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|| ||||||||||||||| |||||||||||| ||||||||| || ||| ||||
Sbjct 25576284 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTATCCGGGCCCT 25576340
Score = 163 bits (180), Expect = 9e-38
Identities = 177/234 (76%), Gaps = 17/234 (7%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 25575773 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 25575832
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| ||||||| | |||
Sbjct 25575833 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 25575883
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
| | | | | || ||| || || || | ||||||| ||||||| ||
Sbjct 25575884 -ACAACAAAACCTGTCTTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 25575942
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 25575943 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 25575996
>seq3
Length=27098305
Score = 187 bits (206), Expect = 7e-45
Identities = 191/247 (77%), Gaps = 7/247 (3%)
Strand=Plus/Minus
Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6040299 GCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTT 6040240
Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGA--CCCCTCTAGAG 125
||||||| ||| || |||||| |||| | |||||||| | || || || || ||
Sbjct 6040239 AATTCGATACAAAGCTAAGAACTTTACTAGGGCTTGACATGCCGCGAATCCTCTTTAAAG 6040180
Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185
|| | ||| | | | ||| || || || ||| ||||| | |||| || |||| |
Sbjct 6040179 ATTGGGGTGTACTC----GGGAACGTAGACGCAAGTGGTGCATAGCTGTCATCGGCTCAT 6040124
Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245
| ||| || | |||||||||||| ||||| |||||||||||| | |||||||||| |
Sbjct 6040123 GCCGTAAGGTATTGGGTTAAGTCTCGCAATGAGCGCAACCCTCGTGTTTAGTTGCCA-CT 6040065
Query 246 TTAAGTT 252
||||||
Sbjct 6040064 ATAAGTT 6040058
Score = 104 bits (114), Expect = 7e-20
Identities = 87/104 (84%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 11353133 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 11353074
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAG 369
||||| |||||||||||||||||| |||| |||| ||| ||
Sbjct 11353073 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAG 11353031
>seq5
Length=38039368
Score = 143 bits (158), Expect = 8e-32
Identities = 144/186 (77%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371
||||||||||||||| ||||| |||||||||||||||||| | |||||||| |||
Sbjct 800316 ATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTCGCG 800257
Query 372 AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431
| ||||||| ||| || ||| ||| | || |||||||||| || || ||||
Sbjct 800256 ATCTCGCGAGGGTGAGCTAACTCCAAAAACCCATCCTAAGTTCGGATTACAGGCTACAAC 800197
Query 432 TCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACG 490
||| || ||||||| ||||||||||||||||| | |||| ||| | |||||||| ||
Sbjct 800196 TCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCG 800137
Query 491 TTCCCG 496
||||||
Sbjct 800136 TTCCCG 800131
Score = 122 bits (134), Expect = 3e-25
Identities = 116/147 (79%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||||||| ||||||| |||||||||||||||| || || |||||| ||||||| ||||||
Sbjct 10774700 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTTGTAAGGTGTTGGTTTAAGTCTCGCAAC 10774641
Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275
||||||||||| | | |||||||||| || || || || || | | ||| |||||
Sbjct 10774640 AAGCGCAACCCTCATGTTTAGTTGCCACTATGAA-TTTGGAACCTTGAACAGACCGCCGG 10774582
Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302
|| || ||||||||| | | ||| ||
Sbjct 10774581 TGTTAAGCCGGAGGAATGAGAGGATGA 10774555
>seq9
Length=31548187
Score = 134 bits (148), Expect = 4e-29
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
|| |||| |||| | || |||||||||||||| |||||||| || |||| | ||||||
Sbjct 11280354 GATTGCCAGTGAGATACTTGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCACTTATG 11280413
Query 327 ATTTGGGCTACACACGTGCTACA-ATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384
||||| |||||||||| ||| |||| |||| |||| ||| ||| | | |||
Sbjct 11280414 GGCTGGGCCACACACGTGCGACATATGG-CAATGACAATGGGAAGCAAGGCTCTAAGGAA 11280472
Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444
||||||| || |||| | ||||||||| ||| | | ||||||||| | |||||
Sbjct 11280473 GAGCAAAT-CCGGAAAGATTGCCTCAGTTCGAATTATTCTATGCAACTCGGGAACATGAA 11280531
Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494
| || ||| ||||||||||| ||||| ||||| |||||||| || ||
Sbjct 11280532 GTTGAAATTGCTAGTAATCGCGGATCAACATGCCGTGGTGAATATGTACC 11280581
Score = 87.8 bits (96), Expect = 5e-15
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 31 TGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACC 90
|| ||||| || |||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 7050616 TGCCGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACC 7050557
Query 91 TTACCA 96
||||||
Sbjct 7050556 TTACCA 7050551
>seq11
Length=27185770
Score = 107 bits (118), Expect = 6e-21
Identities = 131/175 (75%), Gaps = 3/175 (2%)
Strand=Plus/Minus
Query 289 GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTAC 348
||||||||||| |||||||| || |||| |||||||| | ||| |||||||||||||
Sbjct 17127813 GAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTAGGCCACACACGTGCTAC 17127754
Query 349 AATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407
||||| |||| |||| ||| ||| | | | ||| || |||| || |||| | |
Sbjct 17127753 AATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGAAAAT-CCGGAAAGATTGCC 17127696
Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462
||| |||||||||| |||||||||| | |||||| || ||||| |||||
Sbjct 17127695 TCAATTCGGATTGTTCTCTGCAACTCAGGAACATGAAGTTGAAATCGAACGTAAT 17127641
>seq10
Length=28350858
Score = 77.0 bits (84), Expect = 1e-11
Identities = 83/109 (76%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| || ||| ||| || ||||||||||||||||| |||||||| | ||||||
Sbjct 21713868 AGCTAACTCCAAAAATCCGTCCTCAGTTCGGATTGTAGGTTGCAACTCATTTGCATGAAG 21713927
Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTC 493
| |||||||||||||||| | | || ||| | |||||||| |||||
Sbjct 21713928 CAGGAATCGCTAGTAATCACCGGTTAGCCATACGGCGGTGAATCCGTTC 21713976
>seq4
Length=26741765
Score = 77.0 bits (84), Expect = 1e-11
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGG 55
|||| |||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 12844682 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGG 12844736
>seq7
Length=32884216
Score = 75.2 bits (82), Expect = 3e-11
Identities = 70/89 (79%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435
||||||| ||| || ||| ||| ||| |||||||||||||| || ||||||||||
Sbjct 7695121 CGCGAGGGTGAGCTAACTCCAAAAACCTGTCCTCAGTTCGGATTGCAGGCTGCAACTCGC 7695062
Query 436 CTATATGAAGCTGGAATCGCTAGTAATCG 464
|| ||||||| ||||||||| | ||||
Sbjct 7695061 CTGCATGAAGCAGGAATCGCTCCTTATCG 7695033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503999819520
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