Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1 194 5e-47 seq6 192 2e-46 seq3 187 7e-45 seq5 143 8e-32 seq9 134 4e-29 seq11 107 6e-21 seq10 77.0 1e-11 seq4 77.0 1e-11 seq7 75.2 3e-11 >seq1 Length=46529941 Score = 194 bits (214), Expect = 5e-47 Identities = 193/249 (78%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 249 AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308 |||| || || || | ||| ||||||| || ||||||||||| | ||| || | ||| Sbjct 2333785 AGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGGGAGGATGAGGCCAA 2333844 Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368 |||||||||||||||| ||||| |||||||||||||||||| | |||||||| Sbjct 2333845 GTCATCATGCCCCTTATACCCTGGGCAACACACGTGCTACAATGGGCGGGACAAAGGGTC 2333904 Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 |||| ||||||| ||| || ||| ||| || |||||||||||||| || |||| Sbjct 2333905 GCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGC 2333964 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487 |||||| || ||||||| ||||||||||||||||| | |||| ||| | |||||||| Sbjct 2333965 AACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAAT 2334024 Query 488 ACGTTCCCG 496 |||||||| Sbjct 2334025 CCGTTCCCG 2334033 Score = 194 bits (214), Expect = 5e-47 Identities = 193/249 (78%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 249 AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308 |||| || || || | ||| ||||||| || ||||||||||| | ||| || | ||| Sbjct 2350350 AGTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGGGAGGATGAGGCCAA 2350409 Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368 |||||||||||||||| ||||| |||||||||||||||||| | |||||||| Sbjct 2350410 GTCATCATGCCCCTTATACCCTGGGCAACACACGTGCTACAATGGGCGGGACAAAGGGTC 2350469 Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 |||| ||||||| ||| || ||| ||| || |||||||||||||| || |||| Sbjct 2350470 GCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGC 2350529 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487 |||||| || ||||||| ||||||||||||||||| | |||| ||| | |||||||| Sbjct 2350530 AACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAAT 2350589 Query 488 ACGTTCCCG 496 |||||||| Sbjct 2350590 CCGTTCCCG 2350598 >seq6 Length=37594838 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 25576106 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 25576165 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 25576166 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 25576224 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 25576225 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 25576283 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| |||||||||||| ||||||||| || ||| |||| Sbjct 25576284 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTATCCGGGCCCT 25576340 Score = 163 bits (180), Expect = 9e-38 Identities = 177/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 25575773 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 25575832 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 25575833 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 25575883 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | || ||| || || || | ||||||| ||||||| || Sbjct 25575884 -ACAACAAAACCTGTCTTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 25575942 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 25575943 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 25575996 >seq3 Length=27098305 Score = 187 bits (206), Expect = 7e-45 Identities = 191/247 (77%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 6040299 GCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTT 6040240 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGA--CCCCTCTAGAG 125 ||||||| ||| || |||||| |||| | |||||||| | || || || || || Sbjct 6040239 AATTCGATACAAAGCTAAGAACTTTACTAGGGCTTGACATGCCGCGAATCCTCTTTAAAG 6040180 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 || | ||| | | | ||| || || || ||| ||||| | |||| || |||| | Sbjct 6040179 ATTGGGGTGTACTC----GGGAACGTAGACGCAAGTGGTGCATAGCTGTCATCGGCTCAT 6040124 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | ||| || | |||||||||||| ||||| |||||||||||| | |||||||||| | Sbjct 6040123 GCCGTAAGGTATTGGGTTAAGTCTCGCAATGAGCGCAACCCTCGTGTTTAGTTGCCA-CT 6040065 Query 246 TTAAGTT 252 |||||| Sbjct 6040064 ATAAGTT 6040058 Score = 104 bits (114), Expect = 7e-20 Identities = 87/104 (84%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 11353133 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 11353074 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAG 369 ||||| |||||||||||||||||| |||| |||| ||| || Sbjct 11353073 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAG 11353031 >seq5 Length=38039368 Score = 143 bits (158), Expect = 8e-32 Identities = 144/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 ||||||||||||||| ||||| |||||||||||||||||| | |||||||| ||| Sbjct 800316 ATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTCGCG 800257 Query 372 AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431 | ||||||| ||| || ||| ||| | || |||||||||| || || |||| Sbjct 800256 ATCTCGCGAGGGTGAGCTAACTCCAAAAACCCATCCTAAGTTCGGATTACAGGCTACAAC 800197 Query 432 TCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACG 490 ||| || ||||||| ||||||||||||||||| | |||| ||| | |||||||| || Sbjct 800196 TCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCG 800137 Query 491 TTCCCG 496 |||||| Sbjct 800136 TTCCCG 800131 Score = 122 bits (134), Expect = 3e-25 Identities = 116/147 (79%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||||||||||||||| || || |||||| ||||||| |||||| Sbjct 10774700 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTTGTAAGGTGTTGGTTTAAGTCTCGCAAC 10774641 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||||||||||| | | |||||||||| || || || || || | | ||| ||||| Sbjct 10774640 AAGCGCAACCCTCATGTTTAGTTGCCACTATGAA-TTTGGAACCTTGAACAGACCGCCGG 10774582 Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302 || || ||||||||| | | ||| || Sbjct 10774581 TGTTAAGCCGGAGGAATGAGAGGATGA 10774555 >seq9 Length=31548187 Score = 134 bits (148), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | || |||||||||||||| |||||||| || |||| | |||||| Sbjct 11280354 GATTGCCAGTGAGATACTTGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCACTTATG 11280413 Query 327 ATTTGGGCTACACACGTGCTACA-ATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384 ||||| |||||||||| ||| |||| |||| |||| ||| ||| | | ||| Sbjct 11280414 GGCTGGGCCACACACGTGCGACATATGG-CAATGACAATGGGAAGCAAGGCTCTAAGGAA 11280472 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||||||| || |||| | ||||||||| ||| | | ||||||||| | ||||| Sbjct 11280473 GAGCAAAT-CCGGAAAGATTGCCTCAGTTCGAATTATTCTATGCAACTCGGGAACATGAA 11280531 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 | || ||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 11280532 GTTGAAATTGCTAGTAATCGCGGATCAACATGCCGTGGTGAATATGTACC 11280581 Score = 87.8 bits (96), Expect = 5e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 31 TGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACC 90 || ||||| || |||||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 7050616 TGCCGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACC 7050557 Query 91 TTACCA 96 |||||| Sbjct 7050556 TTACCA 7050551 >seq11 Length=27185770 Score = 107 bits (118), Expect = 6e-21 Identities = 131/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 289 GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTAC 348 ||||||||||| |||||||| || |||| |||||||| | ||| ||||||||||||| Sbjct 17127813 GAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTAGGCCACACACGTGCTAC 17127754 Query 349 AATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 ||||| |||| |||| ||| ||| | | | ||| || |||| || |||| | | Sbjct 17127753 AATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGAAAAT-CCGGAAAGATTGCC 17127696 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 ||| |||||||||| |||||||||| | |||||| || ||||| ||||| Sbjct 17127695 TCAATTCGGATTGTTCTCTGCAACTCAGGAACATGAAGTTGAAATCGAACGTAAT 17127641 >seq10 Length=28350858 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || ||| ||| || ||||||||||||||||| |||||||| | |||||| Sbjct 21713868 AGCTAACTCCAAAAATCCGTCCTCAGTTCGGATTGTAGGTTGCAACTCATTTGCATGAAG 21713927 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTC 493 | |||||||||||||||| | | || ||| | |||||||| ||||| Sbjct 21713928 CAGGAATCGCTAGTAATCACCGGTTAGCCATACGGCGGTGAATCCGTTC 21713976 >seq4 Length=26741765 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGG 55 |||| |||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 12844682 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGG 12844736 >seq7 Length=32884216 Score = 75.2 bits (82), Expect = 3e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435 ||||||| ||| || ||| ||| ||| |||||||||||||| || |||||||||| Sbjct 7695121 CGCGAGGGTGAGCTAACTCCAAAAACCTGTCCTCAGTTCGGATTGCAGGCTGCAACTCGC 7695062 Query 436 CTATATGAAGCTGGAATCGCTAGTAATCG 464 || ||||||| ||||||||| | |||| Sbjct 7695061 CTGCATGAAGCAGGAATCGCTCCTTATCG 7695033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999819520