Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10 412 6e-113 seq1 100 5e-19 seq5 73.4 7e-11 >seq10 Length=28350858 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||| Sbjct 10299135 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 10299193 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| || Sbjct 10299194 TGACGGTCTAAACCCAACTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 10299253 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 10299254 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAATGATCAAAAAGCAACGTCGCTAT 10299313 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 10299314 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 10299373 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| || |||||||||||||||||||| |||||| ||||||||||| Sbjct 10299374 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 10299426 >seq1 Length=46529941 Score = 100 bits (110), Expect = 5e-19 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 |||||||||| |||||| ||| ||||| ||| ||| ||| ||| | ||||| || Sbjct 29525329 AGCTCACGTTTCCTATTGGTGTGTGAATAATTCAAAACTTGATGAACTTTGCTTTAAAAT 29525270 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||||||||||| ||||| |||||| |||||||||||| |||| |||| Sbjct 29525269 GATAGGAAGAGCCAACATCAAAGGATAAAAAAGCAACGTACCTATCAACG 29525220 >seq5 Length=38039368 Score = 73.4 bits (80), Expect = 7e-11 Identities = 123/176 (70%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 804522 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 804463 Query 113 CTT---ACCGAATTCTGCTTC-GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 ||| ||| | | ||| | |||| | ||||||||||||||| | |||| Sbjct 804462 CTTGGAACCACCTACAGCTCCAGGTAGCA----AAGAGCCGACATCGAGGTGCCAAACCT 804407 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | ||| ||||||||| ||||||||| Sbjct 804406 TCCCGTCGATGTGGACTCTTGGGGAAGATCAGCATGTTATCCCTAGAGTAACTTTT 804351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399897472