Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq10 412 6e-113
seq1 100 5e-19
seq5 73.4 7e-11
>seq10
Length=28350858
Score = 412 bits (456), Expect = 6e-113
Identities = 268/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| ||||||||||||||||||||||||||||||||||
Sbjct 10299135 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 10299193
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 10299194 TGACGGTCTAAACCCAACTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 10299253
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 10299254 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAATGATCAAAAAGCAACGTCGCTAT 10299313
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 10299314 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 10299373
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||| | ||| || |||||||||||||||||||| |||||| |||||||||||
Sbjct 10299374 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 10299426
>seq1
Length=46529941
Score = 100 bits (110), Expect = 5e-19
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135
|||||||||| |||||| ||| ||||| ||| ||| ||| ||| | ||||| ||
Sbjct 29525329 AGCTCACGTTTCCTATTGGTGTGTGAATAATTCAAAACTTGATGAACTTTGCTTTAAAAT 29525270
Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||||||||||||| ||||| |||||| |||||||||||| |||| ||||
Sbjct 29525269 GATAGGAAGAGCCAACATCAAAGGATAAAAAAGCAACGTACCTATCAACG 29525220
>seq5
Length=38039368
Score = 73.4 bits (80), Expect = 7e-11
Identities = 123/176 (70%), Gaps = 8/176 (5%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 804522 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 804463
Query 113 CTT---ACCGAATTCTGCTTC-GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168
||| ||| | | ||| | |||| | ||||||||||||||| | ||||
Sbjct 804462 CTTGGAACCACCTACAGCTCCAGGTAGCA----AAGAGCCGACATCGAGGTGCCAAACCT 804407
Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | ||| ||||||||| |||||||||
Sbjct 804406 TCCCGTCGATGTGGACTCTTGGGGAAGATCAGCATGTTATCCCTAGAGTAACTTTT 804351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854399897472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |