Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq5 149 1e-33
>seq5
Length=38039368
Score = 149 bits (164), Expect = 1e-33
Identities = 173/232 (75%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| | ||||| |||||||||| |||||||||||
Sbjct 804141 GGGACAGTCTCAGGTAGACAGTTTCTATAGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 804200
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | | |||||||||| | ||||
Sbjct 804201 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGTAGAAGG 804257
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| ||||| || ||||||||| |||| ||||||| |
Sbjct 804258 GAGCTTGACTGCAAGACTCACCTGTCGAGCAGAGATGAAAGTCGGCCTTAGTGATCCGAC 804317
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 804318 AGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 804369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982399882112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |