Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq5 208 2e-51 seq2 205 2e-50 seq6 174 3e-41 seq4 152 1e-34 seq10 141 2e-31 seq8 136 8e-30 seq1 95.1 3e-17 >seq5 Length=38039368 Score = 208 bits (230), Expect = 2e-51 Identities = 149/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 5695381 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 5695439 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| || ||| | Sbjct 5695440 CCGTAGGAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCT 5695499 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| || ||| ||||||||||||||||||| ||| Sbjct 5695500 ACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGAC 5695549 >seq2 Length=22967634 Score = 205 bits (226), Expect = 2e-50 Identities = 231/304 (76%), Gaps = 18/304 (6%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| || |||||||||||||||||| || ||||||||||||||||||||||| Sbjct 22687404 GGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTA 22687462 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 ||||||||| | |||||||||| |||||||| |||||||||||||| |||||| ||| || Sbjct 22687463 GGAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 22687522 Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAT 213 || |||||||||| || ||| ||||||||||||||||||| ||| || | || Sbjct 22687523 TCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTC---- 22687578 Query 214 AGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCG 273 | || |||| || ||| ||| || || | || | ||||||||| ||| Sbjct 22687579 ----CTTGG-ACGAATTTCTCCT--TTTGCTCCTCAG--CCTACGGGGTATTAGCAACCG 22687629 Query 274 TTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCCGC 331 ||||| ||| | ||| || ||| ||||| ||| || || |||||||||||| ||| Sbjct 22687630 TTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGC 22687687 Query 332 CGCT 335 | || Sbjct 22687688 CACT 22687691 >seq6 Length=37594838 Score = 174 bits (192), Expect = 3e-41 Identities = 168/211 (80%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 25575247 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 25575190 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||| ||||||| |||||||||||||||| ||| | ||||| || || ||||||||| || Sbjct 25575189 CCAATGTCCAAGATTCCCCACTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCC 25575131 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 25575130 AGTGTACCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 25575071 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || ||||||||| Sbjct 25575070 GACCAACTACCTAATACTACGCAGGCTCATC 25575040 >seq4 Length=26741765 Score = 152 bits (168), Expect = 1e-34 Identities = 107/121 (88%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 139117 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 139059 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| ||| || | Sbjct 139058 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACTAGCT 138999 Query 149 A 149 | Sbjct 138998 A 138998 >seq10 Length=28350858 Score = 141 bits (156), Expect = 2e-31 Identities = 125/155 (81%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| | |||||||||| Sbjct 12765855 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCACTGC 12765913 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 |||| | ||| ||||| || | |||||| ||| | |||||| |||||||||| ||| Sbjct 12765914 TGCCCCTCGTGGGAGTTCGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGA 12765973 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 |||| || | ||| | | |||||| |||| ||||| Sbjct 12765974 CCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 12766008 >seq8 Length=30429317 Score = 136 bits (150), Expect = 8e-30 Identities = 112/135 (83%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || |||||||||||||||||| || ||||||||||||||| ||||| Sbjct 4512185 GCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCG 4512127 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 ||||||||||| ||||| ||||| | ||||| |||||| |||||| |||||| ||| Sbjct 4512126 TAGGAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACT 4512067 Query 152 GATCGTCGCCTTGGT 166 |||| | |||||||| Sbjct 4512066 GATCATTGCCTTGGT 4512052 >seq1 Length=46529941 Score = 95.1 bits (104), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 25530528 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 25530586 Query 89 CCGTAGGAGTCTGG 102 |||||||||||||| Sbjct 25530587 CCGTAGGAGTCTGG 25530600 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||| Sbjct 20659695 GATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 20659754 Query 188 GCTAATC 194 ||||||| Sbjct 20659755 GCTAATC 20659761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999871360