Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 1e-30
seq3 105 2e-20
seq2 93.3 2e-16
seq7 84.2 8e-14
>seq1
Length=46529941
Score = 140 bits (154), Expect = 1e-30
Identities = 161/214 (75%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| || |||||||||||||||||||||| | | ||| || |||| |||||||||||
Sbjct 25048673 CCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAA 25048614
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||||| |||||| || | | |||||| | ||| ||||||| |||| | || | | |
Sbjct 25048613 CCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATC 25048554
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTC 320
| |||||| |||| |||||||||||||| | ||||||| | | | | ||| | |
Sbjct 25048553 CAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGATAAT- 25048495
Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
|||||||| ||||||||||||||||||||
Sbjct 25048494 ---CGCCCTATGAAGACTCGCTTTCGCTACGGCT 25048464
Score = 123 bits (136), Expect = 9e-26
Identities = 107/132 (81%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| |
Sbjct 37153965 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 37153906
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 37153905 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 37153846
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 37153845 GAGGGTGGTCCC 37153834
>seq3
Length=27098305
Score = 105 bits (116), Expect = 2e-20
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526
|| ||||||| || |||||||||| ||| | ||||| ||||||||||||||||||| ||
Sbjct 11779338 CACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACCGT 11779279
Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564
||| | |||||||||||| |||||||||||| |||
Sbjct 11779278 ACTACATCACTATCGGTCACCCAGGAGTATTTAGCCTT 11779241
>seq2
Length=22967634
Score = 93.3 bits (102), Expect = 2e-16
Identities = 129/178 (72%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238
||| || |||| ||||||||||| ||||| |||||| || | | |||||| | ||| |
Sbjct 9848004 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCAG 9848063
Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298
||||| ||| | || | | || |||||| || | |||| ||||||||| | |
Sbjct 9848064 TTCGGACCTTTGCTTAGTTTCATCCAAGCTTCATCCAGGTCATGTATAGATCACCCAGGT 9848123
Query 299 TCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
|||||| | | | | ||| || | |||||||| ||||||||||||||||||||
Sbjct 9848124 TCGGGTCCATAAGCAGTGACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT 9848177
>seq7
Length=32884216
Score = 84.2 bits (92), Expect = 8e-14
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526
|| ||||||| || |||||||||| ||| | |||||| ||||| |||||||||||| ||
Sbjct 22580994 CACGGTTTCATGTTCTATTTCACTACCCACTAGGGGTTCTTTTTACCTTTCCCTCATGGC 22581053
Query 527 ACTTGTCCGCTATCGGTCACC 547
||| | ||||||| ||||||
Sbjct 22581054 ACTACTTCGCTATCAGTCACC 22581074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817599781888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |