Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1 140 1e-30 seq3 105 2e-20 seq2 93.3 2e-16 seq7 84.2 8e-14 >seq1 Length=46529941 Score = 140 bits (154), Expect = 1e-30 Identities = 161/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| || |||||||||||||||||||||| | | ||| || |||| ||||||||||| Sbjct 25048673 CCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAA 25048614 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| |||||| || | | |||||| | ||| ||||||| |||| | || | | | Sbjct 25048613 CCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATC 25048554 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTC 320 | |||||| |||| |||||||||||||| | ||||||| | | | | ||| | | Sbjct 25048553 CAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGATAAT- 25048495 Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 |||||||| |||||||||||||||||||| Sbjct 25048494 ---CGCCCTATGAAGACTCGCTTTCGCTACGGCT 25048464 Score = 123 bits (136), Expect = 9e-26 Identities = 107/132 (81%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| | Sbjct 37153965 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 37153906 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 37153905 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 37153846 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 37153845 GAGGGTGGTCCC 37153834 >seq3 Length=27098305 Score = 105 bits (116), Expect = 2e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | ||||| ||||||||||||||||||| || Sbjct 11779338 CACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACCGT 11779279 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| | |||||||||||| |||||||||||| ||| Sbjct 11779278 ACTACATCACTATCGGTCACCCAGGAGTATTTAGCCTT 11779241 >seq2 Length=22967634 Score = 93.3 bits (102), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| ||||||||||| ||||| |||||| || | | |||||| | ||| | Sbjct 9848004 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCAG 9848063 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| ||| | || | | || |||||| || | |||| ||||||||| | | Sbjct 9848064 TTCGGACCTTTGCTTAGTTTCATCCAAGCTTCATCCAGGTCATGTATAGATCACCCAGGT 9848123 Query 299 TCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 |||||| | | | | ||| || | |||||||| |||||||||||||||||||| Sbjct 9848124 TCGGGTCCATAAGCAGTGACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT 9848177 >seq7 Length=32884216 Score = 84.2 bits (92), Expect = 8e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | |||||| ||||| |||||||||||| || Sbjct 22580994 CACGGTTTCATGTTCTATTTCACTACCCACTAGGGGTTCTTTTTACCTTTCCCTCATGGC 22581053 Query 527 ACTTGTCCGCTATCGGTCACC 547 ||| | ||||||| |||||| Sbjct 22581054 ACTACTTCGCTATCAGTCACC 22581074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599781888