Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3 118 3e-24 seq1 111 4e-22 seq7 80.6 7e-13 seq2 78.8 2e-12 >seq3 Length=27098305 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||| || Sbjct 11779337 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACCGT 11779279 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| ||||||||||||| ||| |||||||||||||| | | ||| Sbjct 11779278 ACTACATCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 11779232 >seq1 Length=46529941 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 37153960 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 37153902 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 37153901 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 37153842 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 37153841 GTGGTCCCCC 37153832 Score = 96.9 bits (106), Expect = 9e-18 Identities = 205/292 (70%), Gaps = 18/292 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 25048613 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 25048557 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 25048556 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 25048501 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 || || ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 25048500 GA-TAATCGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 25048443 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 25048442 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 25048383 Query 243 AAGTGGGCTCCCACTGCTTGTACGC---ATACGGTTTCAGGATCTATTTCAC 291 | ||||||||||||| || ||||||||| | |||||||||| Sbjct 25048382 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCAC 25048331 >seq7 Length=32884216 Score = 80.6 bits (88), Expect = 7e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| || Sbjct 22580995 ACGGTTTCATGTTCTATTTCACTACCCACTA-GGGGTTCTTTTTACCTTTCCCTCATGGC 22581053 Query 330 ACTAGTTCACTATCGGTCA 348 |||| ||| ||||| |||| Sbjct 22581054 ACTACTTCGCTATCAGTCA 22581072 >seq2 Length=22967634 Score = 78.8 bits (86), Expect = 2e-12 Identities = 204/297 (69%), Gaps = 18/297 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| |||| |||||| ||| ||||| | Sbjct 9848028 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCAGTTCGGACCTTTGCTTAGTT-TC 9848084 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || || | ||| | ||||||| ||| | || |||||| || | || Sbjct 9848085 ATCCAAGCTT-CATCCAGGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 9848140 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 9848141 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 9848198 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 9848199 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 9848258 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCC 296 | |||||||| |||| || | |||||||| | ||||||||||| ||| Sbjct 9848259 CTTTCCCCTCCCACTACTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCC 9848315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599851008