Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 3e-24
seq1 111 4e-22
seq7 80.6 7e-13
seq2 78.8 2e-12
>seq3
Length=27098305
Score = 118 bits (130), Expect = 3e-24
Identities = 91/107 (85%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||| ||
Sbjct 11779337 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACCGT 11779279
Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376
|||| ||||||||||||| ||| |||||||||||||| | | |||
Sbjct 11779278 ACTACATCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 11779232
>seq1
Length=46529941
Score = 111 bits (122), Expect = 4e-22
Identities = 104/130 (80%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| |||||||| | |||||||||||
Sbjct 37153960 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 37153902
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 37153901 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 37153842
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 37153841 GTGGTCCCCC 37153832
Score = 96.9 bits (106), Expect = 9e-18
Identities = 205/292 (70%), Gaps = 18/292 (6%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| |
Sbjct 25048613 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 25048557
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 25048556 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 25048501
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182
|| || ||||||| |||||||||||| ||||||| |||| | ||| ||| |
Sbjct 25048500 GA-TAATCGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 25048443
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
| ||||||| || |||||| | | |||| | ||| ||| |||| |||| | ||
Sbjct 25048442 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 25048383
Query 243 AAGTGGGCTCCCACTGCTTGTACGC---ATACGGTTTCAGGATCTATTTCAC 291
| ||||||||||||| || ||||||||| | ||||||||||
Sbjct 25048382 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCAC 25048331
>seq7
Length=32884216
Score = 80.6 bits (88), Expect = 7e-13
Identities = 66/79 (84%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||
Sbjct 22580995 ACGGTTTCATGTTCTATTTCACTACCCACTA-GGGGTTCTTTTTACCTTTCCCTCATGGC 22581053
Query 330 ACTAGTTCACTATCGGTCA 348
|||| ||| ||||| ||||
Sbjct 22581054 ACTACTTCGCTATCAGTCA 22581072
>seq2
Length=22967634
Score = 78.8 bits (86), Expect = 2e-12
Identities = 204/297 (69%), Gaps = 18/297 (6%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| |||| |||||| ||| ||||| |
Sbjct 9848028 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCAGTTCGGACCTTTGCTTAGTT-TC 9848084
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||| ||| || || | ||| | ||||||| ||| | || |||||| || | ||
Sbjct 9848085 ATCCAAGCTT-CATCCAGGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 9848140
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182
||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| |
Sbjct 9848141 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 9848198
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
| ||||||| || |||||| | | |||| | ||| ||| |||| |||| | ||
Sbjct 9848199 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 9848258
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCC 296
| |||||||| |||| || | |||||||| | ||||||||||| |||
Sbjct 9848259 CTTTCCCCTCCCACTACTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCC 9848315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241599851008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |