Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 206 5e-51
seq5 165 2e-38
seq4 127 4e-27
seq8 113 9e-23
seq6 102 2e-19
seq10 87.8 4e-15
seq1 82.4 2e-13
>seq2
Length=22967634
Score = 206 bits (228), Expect = 5e-51
Identities = 230/304 (76%), Gaps = 16/304 (5%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 22687404 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 22687463
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||||| |||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 22687464 GAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 22687523
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| | |||| ||||||||||| |||||| | ||||||||| || ||
Sbjct 22687524 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 22687583
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240
||| | ||| | ||| ||||| | | || | ||||||||| |
Sbjct 22687584 ACGA-ATTTCT----------CCTTTTGC--TCCTCAGCC--TACGGGGTATTAGCAACC 22687628
Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300
||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| |||
Sbjct 22687629 GTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCGC 22687687
Query 301 CACT 304
||||
Sbjct 22687688 CACT 22687691
>seq5
Length=38039368
Score = 165 bits (182), Expect = 2e-38
Identities = 136/166 (82%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 5695386 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 5695445
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||||||| |||||| | ||| |||||| | | ||||| |||
Sbjct 5695446 GAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGAT 5695505
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166
| ||| |||||| | |||| ||||||||||| |||||| | |||
Sbjct 5695506 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGC 5695551
>seq4
Length=26741765
Score = 127 bits (140), Expect = 4e-27
Identities = 91/105 (87%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 139112 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139053
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105
||||||||||||||||||||||||| |||||| | ||| ||||||
Sbjct 139052 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 139008
>seq8
Length=30429317
Score = 113 bits (124), Expect = 9e-23
Identities = 104/132 (79%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||| ||||||||
Sbjct 4512183 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGTAG 4512124
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||| ||||| ||||||| | ||| || | || ||||| || || |||| |||
Sbjct 4512123 GAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTGAT 4512064
Query 121 CGTCGGCTTGGT 132
| | | ||||||
Sbjct 4512063 CATTGCCTTGGT 4512052
>seq6
Length=37594838
Score = 102 bits (112), Expect = 2e-19
Identities = 115/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||| ||| ||| || ||||||||||||| ||| || ||||
Sbjct 25575207 GCTGGATCGGGCTTTCGCCCAATGTCCAAGATTCCCCACTGCTGCCCCCCTGAG-AGTCC 25575149
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||| ||||||||||||| ||| | | ||| || || || |||| ||| | ||
Sbjct 25575148 GGGCCATGTCTCAGTCCCAGTGTACCTGATCATCCAAAAAGACCAGCTAAGCATCATTGG 25575089
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| | ||||||||||||||
Sbjct 25575088 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 25575056
>seq10
Length=28350858
Score = 87.8 bits (96), Expect = 4e-15
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| | ||||||||||||| | ||| |||||
Sbjct 12765872 GCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCACTGCTGCCCCTCGTGGGAGTTC 12765931
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
|||| |||||| ||||| | |||||| | ||| || || || |||| ||| | ||
Sbjct 12765932 GGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 12765991
Query 127 CTTGGT 132
||||||
Sbjct 12765992 CTTGGT 12765997
>seq1
Length=46529941
Score = 82.4 bits (90), Expect = 2e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 25530533 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 25530592
Query 61 GAGTCTGGGC 70
||||||||||
Sbjct 25530593 GAGTCTGGGC 25530602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998399880192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |