Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2 206 5e-51 seq5 165 2e-38 seq4 127 4e-27 seq8 113 9e-23 seq6 102 2e-19 seq10 87.8 4e-15 seq1 82.4 2e-13 >seq2 Length=22967634 Score = 206 bits (228), Expect = 5e-51 Identities = 230/304 (76%), Gaps = 16/304 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 22687404 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 22687463 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||| |||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 22687464 GAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 22687523 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| | |||| ||||||||||| |||||| | ||||||||| || || Sbjct 22687524 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 22687583 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | ||| | ||| ||||| | | || | ||||||||| | Sbjct 22687584 ACGA-ATTTCT----------CCTTTTGC--TCCTCAGCC--TACGGGGTATTAGCAACC 22687628 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| ||| Sbjct 22687629 GTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCGC 22687687 Query 301 CACT 304 |||| Sbjct 22687688 CACT 22687691 >seq5 Length=38039368 Score = 165 bits (182), Expect = 2e-38 Identities = 136/166 (82%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 5695386 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 5695445 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||||||| |||||| | ||| |||||| | | ||||| ||| Sbjct 5695446 GAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGAT 5695505 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166 | ||| |||||| | |||| ||||||||||| |||||| | ||| Sbjct 5695506 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGC 5695551 >seq4 Length=26741765 Score = 127 bits (140), Expect = 4e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 139112 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139053 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||||||||||||||||||||||| |||||| | ||| |||||| Sbjct 139052 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 139008 >seq8 Length=30429317 Score = 113 bits (124), Expect = 9e-23 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||||||||| |||||||| Sbjct 4512183 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGTAG 4512124 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| ||||| ||||||| | ||| || | || ||||| || || |||| ||| Sbjct 4512123 GAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTGAT 4512064 Query 121 CGTCGGCTTGGT 132 | | | |||||| Sbjct 4512063 CATTGCCTTGGT 4512052 >seq6 Length=37594838 Score = 102 bits (112), Expect = 2e-19 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||| ||| ||| || ||||||||||||| ||| || |||| Sbjct 25575207 GCTGGATCGGGCTTTCGCCCAATGTCCAAGATTCCCCACTGCTGCCCCCCTGAG-AGTCC 25575149 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| ||| | | ||| || || || |||| ||| | || Sbjct 25575148 GGGCCATGTCTCAGTCCCAGTGTACCTGATCATCCAAAAAGACCAGCTAAGCATCATTGG 25575089 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 25575088 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 25575056 >seq10 Length=28350858 Score = 87.8 bits (96), Expect = 4e-15 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| | ||||||||||||| | ||| ||||| Sbjct 12765872 GCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCACTGCTGCCCCTCGTGGGAGTTC 12765931 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| |||||| ||||| | |||||| | ||| || || || |||| ||| | || Sbjct 12765932 GGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 12765991 Query 127 CTTGGT 132 |||||| Sbjct 12765992 CTTGGT 12765997 >seq1 Length=46529941 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 25530533 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 25530592 Query 61 GAGTCTGGGC 70 |||||||||| Sbjct 25530593 GAGTCTGGGC 25530602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399880192