Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq11 176 1e-41 seq1 154 3e-35 seq10 105 2e-20 seq4 104 5e-20 seq6 77.0 8e-12 >seq11 Length=27185770 Score = 176 bits (194), Expect = 1e-41 Identities = 157/194 (81%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| || |||| | || || || Sbjct 2183921 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCA 2183864 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 2183863 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTT 2183804 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| ||| Sbjct 2183803 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 2183744 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 2183743 CTGTTTCCCTCTCG 2183730 >seq1 Length=46529941 Score = 154 bits (170), Expect = 3e-35 Identities = 150/192 (78%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| | || || ||| || ||||||| Sbjct 8342165 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTTGGTGCCATGGAG---CTAGACCAGT 8342221 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 8342222 GAGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 8342281 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 8342282 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 8342341 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 8342342 GTTTCCCTCTCG 8342353 >seq10 Length=28350858 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||| ||| ||||||||||| |||| |||||||||| | || |||||||||| | ||| Sbjct 17839130 TGAGATATAACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTTT 17839071 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 ||| | |||| |||||| ||||||| || |||||||||||||||| ||| Sbjct 17839070 GCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGA 17839018 >seq4 Length=26741765 Score = 104 bits (114), Expect = 5e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 304 CAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTA 363 ||||| |||||||||| ||||| ||| | |||| |||||| ||||||| || ||| Sbjct 12845250 CAAGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTA 12845191 Query 364 GGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||||||||| ||||| ||||||||||||||||| Sbjct 12845190 GGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 12845154 >seq6 Length=37594838 Score = 77.0 bits (84), Expect = 8e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360 || |||||| ||||| |||||||| || ||| |||||| ||||| ||| | | Sbjct 11743576 TTACAAGCCCACCTCTTGGTTGTCATCGTTCGATCACTTCCTTTTCCACTAAGTGATTGC 11743517 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTC 397 |||||| ||||||| |||||||| |||||||||||| Sbjct 11743516 TTAGGGACCTTAGCGTATGATCTGTGCTGTTTCCCTC 11743480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688