Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq11 176 1e-41
seq1 154 3e-35
seq10 105 2e-20
seq4 104 5e-20
seq6 77.0 8e-12
>seq11
Length=27185770
Score = 176 bits (194), Expect = 1e-41
Identities = 157/194 (81%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||||| ||| |||| |||||| | ||| || |||| | || || ||
Sbjct 2183921 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCA 2183864
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||||||||||||| |||| |||||||||| | || |||||||||| |||||
Sbjct 2183863 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTT 2183804
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | |||| |||||| ||||||| || |||||||||||||||| ||||| |||
Sbjct 2183803 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 2183744
Query 387 CTGTTTCCCTCTCG 400
||||||||||||||
Sbjct 2183743 CTGTTTCCCTCTCG 2183730
>seq1
Length=46529941
Score = 154 bits (170), Expect = 3e-35
Identities = 150/192 (78%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | ||||| | || || ||| || |||||||
Sbjct 8342165 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTTGGTGCCATGGAG---CTAGACCAGT 8342221
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
||||||||| || |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 8342222 GAGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 8342281
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 8342282 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 8342341
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 8342342 GTTTCCCTCTCG 8342353
>seq10
Length=28350858
Score = 105 bits (116), Expect = 2e-20
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327
|||| ||| ||||||||||| |||| |||||||||| | || |||||||||| | |||
Sbjct 17839130 TGAGATATAACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTTT 17839071
Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380
||| | |||| |||||| ||||||| || |||||||||||||||| |||
Sbjct 17839070 GCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGA 17839018
>seq4
Length=26741765
Score = 104 bits (114), Expect = 5e-20
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 304 CAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTA 363
||||| |||||||||| ||||| ||| | |||| |||||| ||||||| || |||
Sbjct 12845250 CAAGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTA 12845191
Query 364 GGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||||||||||||| ||||| |||||||||||||||||
Sbjct 12845190 GGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 12845154
>seq6
Length=37594838
Score = 77.0 bits (84), Expect = 8e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360
|| |||||| ||||| |||||||| || ||| |||||| ||||| ||| | |
Sbjct 11743576 TTACAAGCCCACCTCTTGGTTGTCATCGTTCGATCACTTCCTTTTCCACTAAGTGATTGC 11743517
Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTC 397
|||||| ||||||| |||||||| ||||||||||||
Sbjct 11743516 TTAGGGACCTTAGCGTATGATCTGTGCTGTTTCCCTC 11743480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177599858688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |