Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-25 seq3 98.7 8e-19 seq1 95.1 1e-17 seq11 91.5 1e-16 seq9 80.6 2e-13 >seq6 Length=37594838 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 25576272 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 25576214 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 25576213 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 25576154 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 25576153 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 25576114 >seq3 Length=27098305 Score = 98.7 bits (108), Expect = 8e-19 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 11353047 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCA 11353106 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 11353107 CCTTCCTCCAGTATCTCAC 11353125 >seq1 Length=46529941 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 2333970 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2333911 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||||||| ||| Sbjct 2333910 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTTGCCCAGGGTATAAGGGGCAT 2333851 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 2333850 GATGACTTGGCCTCATCCTCCCCTTCCTCCGGCTT 2333816 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 2350535 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2350476 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||||||| ||| Sbjct 2350475 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTTGCCCAGGGTATAAGGGGCAT 2350416 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 2350415 GATGACTTGGCCTCATCCTCCCCTTCCTCCGGCTT 2350381 >seq11 Length=27185770 Score = 91.5 bits (100), Expect = 1e-16 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| |||||||| | | | | ||||| || ||| |||| ||| | | Sbjct 17127670 GAGTTGCAGAGAACAATCCGAATTGAGGCAATCTTTCCGG-ATTTTCTCCGCCTTACAGC 17127728 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| ||| | |||||||| ||||||| ||| ||||||||||||||| Sbjct 17127729 CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCATG 17127788 Query 123 AGGACTTGACGTCATCCCCACCTTC 147 |||||||||||||||||||||||| Sbjct 17127789 CGGACTTGACGTCATCCCCACCTTC 17127813 >seq9 Length=31548187 Score = 80.6 bits (88), Expect = 2e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||| Sbjct 11280430 ACGTGTGTGGCCCAGCCCATAAGTGCCATGCGGACTTGACGTCATCCCCACCTTCCTCAA 11280371 Query 153 GTTTGTCAC 161 || | |||| Sbjct 11280370 GTATCTCAC 11280362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999951640