Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 9e-25
seq3 98.7 8e-19
seq1 95.1 1e-17
seq11 91.5 1e-16
seq9 80.6 2e-13
>seq6
Length=37594838
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 25576272 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 25576214
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 25576213 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 25576154
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 25576153 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 25576114
>seq3
Length=27098305
Score = 98.7 bits (108), Expect = 8e-19
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 11353047 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCA 11353106
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||| || | ||||
Sbjct 11353107 CCTTCCTCCAGTATCTCAC 11353125
>seq1
Length=46529941
Score = 95.1 bits (104), Expect = 1e-17
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 2333970 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2333911
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| ||||||| |||
Sbjct 2333910 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTTGCCCAGGGTATAAGGGGCAT 2333851
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 2333850 GATGACTTGGCCTCATCCTCCCCTTCCTCCGGCTT 2333816
Score = 95.1 bits (104), Expect = 1e-17
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 2350535 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2350476
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| ||||||| |||
Sbjct 2350475 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTTGCCCAGGGTATAAGGGGCAT 2350416
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 2350415 GATGACTTGGCCTCATCCTCCCCTTCCTCCGGCTT 2350381
>seq11
Length=27185770
Score = 91.5 bits (100), Expect = 1e-16
Identities = 108/145 (74%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||||||| |||||||| | | | | ||||| || ||| |||| ||| | |
Sbjct 17127670 GAGTTGCAGAGAACAATCCGAATTGAGGCAATCTTTCCGG-ATTTTCTCCGCCTTACAGC 17127728
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| || ||| ||| | |||||||| ||||||| ||| |||||||||||||||
Sbjct 17127729 CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCATG 17127788
Query 123 AGGACTTGACGTCATCCCCACCTTC 147
||||||||||||||||||||||||
Sbjct 17127789 CGGACTTGACGTCATCCCCACCTTC 17127813
>seq9
Length=31548187
Score = 80.6 bits (88), Expect = 2e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152
||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 11280430 ACGTGTGTGGCCCAGCCCATAAGTGCCATGCGGACTTGACGTCATCCCCACCTTCCTCAA 11280371
Query 153 GTTTGTCAC 161
|| | ||||
Sbjct 11280370 GTATCTCAC 11280362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415999951640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |