Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-24 seq6 95.1 2e-17 >seq1 Length=46529941 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 25530332 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 25530391 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 25530392 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 25530451 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 25530452 CGATGCTTATTCCTCAGATA 25530471 >seq6 Length=37594838 Score = 95.1 bits (104), Expect = 2e-17 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC---GTATT 244 ||||||||| ||||||||| | | | | |||| | ||| |||||| ||| | || || Sbjct 25575382 CCGCCTACATGCCCTTTACGACTAGTCATTCCGAAGAACACTTGCCCCCTCCCCTGTCTT 25575323 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||||| ||||||||| ||||| |||||| Sbjct 25575322 ACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 25575282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799903652