Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq5 241 2e-61 seq11 82.4 1e-13 seq6 75.2 2e-11 >seq5 Length=38039368 Score = 241 bits (266), Expect = 2e-61 Identities = 218/273 (80%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 804692 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 804633 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| ||| |||||| |||| |||||||||||||||||| Sbjct 804632 TTTACCGTAGGCACGATAACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 804573 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 804572 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 804513 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 804512 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 804453 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | | |||||||||||| Sbjct 804452 CCTACAGCTCCAGGTAGCAAAGAGCCGACATCG 804420 >seq11 Length=27185770 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 |||| |||| |||||| |||||| |||| |||| ||| |||||| | | | | ||| Sbjct 7035726 CTTATATGCTTTCAGCAGTTATCCTTTCCGCACTTGGCTACCCAGCGTTTACCGTAAGCA 7035667 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 | || |||| ||||| |||| |||| |||||||||||||||||| |||||| Sbjct 7035666 TGATAATTGGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACT-AGGACA 7035614 >seq6 Length=37594838 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/111 (75%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 34200075 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 34200134 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 |||| ||||| ||| ||| |||||||||||||| || ||||||| || Sbjct 34200135 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCA 34200185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799909232