Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq5 241 2e-61
seq11 82.4 1e-13
seq6 75.2 2e-11
>seq5
Length=38039368
Score = 241 bits (266), Expect = 2e-61
Identities = 218/273 (80%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 804692 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 804633
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| ||| |||||| |||| ||||||||||||||||||
Sbjct 804632 TTTACCGTAGGCACGATAACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 804573
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 804572 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 804513
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || | ||||||||||||||||||||||||||| |||
Sbjct 804512 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 804453
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| |||| ||||| | | ||||||||||||
Sbjct 804452 CCTACAGCTCCAGGTAGCAAAGAGCCGACATCG 804420
>seq11
Length=27185770
Score = 82.4 bits (90), Expect = 1e-13
Identities = 88/114 (77%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
|||| |||| |||||| |||||| |||| |||| ||| |||||| | | | | |||
Sbjct 7035726 CTTATATGCTTTCAGCAGTTATCCTTTCCGCACTTGGCTACCCAGCGTTTACCGTAAGCA 7035667
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129
| || |||| ||||| |||| |||| |||||||||||||||||| ||||||
Sbjct 7035666 TGATAATTGGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACT-AGGACA 7035614
>seq6
Length=37594838
Score = 75.2 bits (82), Expect = 2e-11
Identities = 83/111 (75%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 34200075 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 34200134
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139
|||| ||||| ||| ||| |||||||||||||| || ||||||| ||
Sbjct 34200135 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCA 34200185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780799909232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |