Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2 208 2e-51 seq5 194 4e-47 seq4 174 4e-41 seq6 143 7e-32 seq8 138 3e-30 seq10 127 5e-27 seq1 111 4e-22 seq3 75.2 3e-11 >seq2 Length=22967634 Score = 208 bits (230), Expect = 2e-51 Identities = 229/301 (76%), Gaps = 13/301 (4%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95 ||||| ||| | |||||||| ||||||||| | || |||||||||||||||||||||||| Sbjct 22687404 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 22687463 Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 155 |||||||| | |||||||||| |||||||||||| |||||||||| ||||||||| ||| Sbjct 22687464 GAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 22687523 Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATA 215 | |||||| ||| | ||| || | |||||||||||||| | | | | ||| | Sbjct 22687524 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--TT 22687581 Query 216 GTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGT 275 | || |||| || || |||| || | | | || | ||||||||| ||||| Sbjct 22687582 G-GA------CGAATTTCTCC--TTTTGCTCCTCAGCC--TACGGGGTATTAGCAACCGT 22687630 Query 276 TTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCAC 335 ||||||| ||| | ||||||| ||||| ||| | | |||||||||||| |||||| Sbjct 22687631 TTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCAC 22687690 Query 336 T 336 | Sbjct 22687691 T 22687691 >seq5 Length=38039368 Score = 194 bits (214), Expect = 4e-47 Identities = 142/165 (86%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||| ||| | |||||||| ||||||||| | || ||||||||||||||||||| Sbjct 5695381 CACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 5695440 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||||||| |||||||||| || |||||| Sbjct 5695441 CGTAGGAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTA 5695500 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| ||| | ||| || | |||||||||||||| Sbjct 5695501 CTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATC 5695545 >seq4 Length=26741765 Score = 174 bits (192), Expect = 4e-41 Identities = 126/146 (86%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 139143 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 139084 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 139083 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 139024 Query 125 GGCTGGTCATCCTCTCAGACCAGCTA 150 ||||| |||||||||| ||| ||||| Sbjct 139023 GGCTGATCATCCTCTCGGACTAGCTA 138998 >seq6 Length=37594838 Score = 143 bits (158), Expect = 7e-32 Identities = 149/193 (77%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 25575247 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 25575188 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 | ||| ||| |||||||||||||||| ||| | ||||| || || ||||||||| |||| Sbjct 25575187 AATGTCCAAGATTCCCCACTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCCAG 25575129 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||| ||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 25575128 TGTACCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 25575069 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 25575068 CCAACTACCTAAT 25575056 >seq8 Length=30429317 Score = 138 bits (152), Expect = 3e-30 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| | |||||||| ||||||||| | || ||||||||||||||| |||||| Sbjct 4512185 GCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGT 4512126 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 |||||||||| ||||| ||||| | ||||| |||| || |||||| |||||| ||| | Sbjct 4512125 AGGAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTG 4512066 Query 154 ATCGTCGCCTAGGT 167 ||| | |||| ||| Sbjct 4512065 ATCATTGCCTTGGT 4512052 >seq10 Length=28350858 Score = 127 bits (140), Expect = 5e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||| |||| |||||| || |||| ||| ||||| |||||||||| ||| | |||||| Sbjct 12765850 CCTTATTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCA 12765909 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| | ||| ||||| || | |||||| ||| | |||||||||| |||||| Sbjct 12765910 CTGCTGCCCCTCGTGGGAGTTCGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAA 12765969 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 |||||||||| | ||| | | || ||| ||| |||||| Sbjct 12765970 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 12766009 >seq1 Length=46529941 Score = 111 bits (122), Expect = 4e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 25530502 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 25530561 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 | | || |||||||||||||||||||||||||||||||| Sbjct 25530562 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 25530600 >seq3 Length=27098305 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||| |||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 19623064 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 19623114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312