Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq2 208 2e-51
seq5 194 4e-47
seq4 174 4e-41
seq6 143 7e-32
seq8 138 3e-30
seq10 127 5e-27
seq1 111 4e-22
seq3 75.2 3e-11
>seq2
Length=22967634
Score = 208 bits (230), Expect = 2e-51
Identities = 229/301 (76%), Gaps = 13/301 (4%)
Strand=Plus/Plus
Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95
||||| ||| | |||||||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 22687404 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 22687463
Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 155
|||||||| | |||||||||| |||||||||||| |||||||||| ||||||||| |||
Sbjct 22687464 GAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 22687523
Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATA 215
| |||||| ||| | ||| || | |||||||||||||| | | | | ||| |
Sbjct 22687524 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--TT 22687581
Query 216 GTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGT 275
| || |||| || || |||| || | | | || | ||||||||| |||||
Sbjct 22687582 G-GA------CGAATTTCTCC--TTTTGCTCCTCAGCC--TACGGGGTATTAGCAACCGT 22687630
Query 276 TTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCAC 335
||||||| ||| | ||||||| ||||| ||| | | |||||||||||| ||||||
Sbjct 22687631 TTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCAC 22687690
Query 336 T 336
|
Sbjct 22687691 T 22687691
>seq5
Length=38039368
Score = 194 bits (214), Expect = 4e-47
Identities = 142/165 (86%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
|||||||||| ||| | |||||||| ||||||||| | || |||||||||||||||||||
Sbjct 5695381 CACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 5695440
Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150
||||||||||||| |||||||||||| |||||||||||| |||||||||| || ||||||
Sbjct 5695441 CGTAGGAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTA 5695500
Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||| |||||| ||| | ||| || | ||||||||||||||
Sbjct 5695501 CTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATC 5695545
>seq4
Length=26741765
Score = 174 bits (192), Expect = 4e-41
Identities = 126/146 (86%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 139143 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 139084
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 139083 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 139024
Query 125 GGCTGGTCATCCTCTCAGACCAGCTA 150
||||| |||||||||| ||| |||||
Sbjct 139023 GGCTGATCATCCTCTCGGACTAGCTA 138998
>seq6
Length=37594838
Score = 143 bits (158), Expect = 7e-32
Identities = 149/193 (77%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 25575247 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 25575188
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
| ||| ||| |||||||||||||||| ||| | ||||| || || ||||||||| ||||
Sbjct 25575187 AATGTCCAAGATTCCCCACTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCCAG 25575129
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
||| ||| |||||| |||||||||| | ||| | | || ||| ||| ||||||
Sbjct 25575128 TGTACCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 25575069
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 25575068 CCAACTACCTAAT 25575056
>seq8
Length=30429317
Score = 138 bits (152), Expect = 3e-30
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93
||||||| ||| | |||||||| ||||||||| | || ||||||||||||||| ||||||
Sbjct 4512185 GCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGT 4512126
Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153
|||||||||| ||||| ||||| | ||||| |||| || |||||| |||||| ||| |
Sbjct 4512125 AGGAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTG 4512066
Query 154 ATCGTCGCCTAGGT 167
||| | |||| |||
Sbjct 4512065 ATCATTGCCTTGGT 4512052
>seq10
Length=28350858
Score = 127 bits (140), Expect = 5e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
|||| |||| |||||| || |||| ||| ||||| |||||||||| ||| | ||||||
Sbjct 12765850 CCTTATTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCA 12765909
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||||| | ||| ||||| || | |||||| ||| | |||||||||| ||||||
Sbjct 12765910 CTGCTGCCCCTCGTGGGAGTTCGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAA 12765969
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179
|||||||||| | ||| | | || ||| ||| ||||||
Sbjct 12765970 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 12766009
>seq1
Length=46529941
Score = 111 bits (122), Expect = 4e-22
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 25530502 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 25530561
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103
| | || ||||||||||||||||||||||||||||||||
Sbjct 25530562 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 25530600
>seq3
Length=27098305
Score = 75.2 bits (82), Expect = 3e-11
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150
|||| |||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 19623064 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 19623114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222399853312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |