Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6 215 2e-53 seq1 214 5e-53 seq5 210 7e-52 seq2 194 5e-47 seq4 168 2e-39 seq10 131 5e-28 seq8 125 2e-26 >seq6 Length=37594838 Score = 215 bits (238), Expect = 2e-53 Identities = 249/330 (75%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 25575056 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTTGG 25575115 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| | ||| ||| ||||||||| || || |||| | ||| ||||||||||||| Sbjct 25575116 ATGATCAGGTACACTGGGACTGAGACATGGCCCGGACTCTCAGGGG-GGCAGCAGTGGGG 25575174 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||| ||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 25575175 AATCTTGGACATTGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 25575234 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || || | || ||||| | ||| ||||| ||||||| Sbjct 25575235 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 25575294 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGGGCTAGCGTTATCCGGAA 460 ||||||||| |||||||||||||||||||| || | ||||||| || ||| | ||||| Sbjct 25575295 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGGGCAAGTGTTCTTCGGAA 25575354 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | ||| | ||||||||| ||||| ||| Sbjct 25575355 TGACT-AGTCGTAAAGGGCATGTAGGCGGT 25575383 >seq1 Length=46529941 Score = 214 bits (236), Expect = 5e-53 Identities = 195/244 (80%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 ||| |||||||||||||||||||||||||||| || | |||||||| ||||||||| | | Sbjct 25530600 CCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGA 25530541 Query 319 GCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--A 376 |||| |||||||| | ||||||| |||||||| || ||| | ||| |||| | Sbjct 25530540 GCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAA 25530481 Query 377 TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 |||||||||| |||||| |||| ||||||||| ||||||||||||||||||| || Sbjct 25530480 CAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGAC 25530421 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 ||| || ||||||||||||||| | | |||||||||| || |||||||| || | | Sbjct 25530420 AGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCA 25530362 Query 497 AGTC 500 |||| Sbjct 25530361 AGTC 25530358 Score = 78.8 bits (86), Expect = 3e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| ||| || |||||||||||||| |||||||||| | | ||||| Sbjct 20659761 GATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAG 20659702 Query 227 GGTGATCG 234 | |||||| Sbjct 20659701 GATGATCG 20659694 >seq5 Length=38039368 Score = 210 bits (232), Expect = 7e-52 Identities = 149/171 (87%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||| || ||||||||||||| |||||||||| || | Sbjct 5695551 GCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGATC 5695492 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 5695491 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 5695432 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| Sbjct 5695431 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTG 5695381 >seq2 Length=22967634 Score = 194 bits (214), Expect = 5e-47 Identities = 143/167 (86%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||||||||||||| |||||||||| | Sbjct 22687570 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGGT 22687511 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||| | ||| ||||||||||||||||| Sbjct 22687510 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCCAGACTCCTACGGGAGGCAG 22687451 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326 ||||||||||| || | |||||||| ||||||||| | ||||| ||| Sbjct 22687450 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCC 22687404 >seq4 Length=26741765 Score = 168 bits (186), Expect = 2e-39 Identities = 147/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||| Sbjct 139008 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCA 139067 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||||||||| || | |||||||| ||||||||| | ||||| |||||||| | |||| Sbjct 139068 GTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAG 139127 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAA 399 ||| |||||||| || ||| | ||| |||| | |||||||||| |||||| || Sbjct 139128 GCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAA 139187 Query 400 GC 401 || Sbjct 139188 GC 139189 >seq10 Length=28350858 Score = 131 bits (144), Expect = 5e-28 Identities = 177/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243 ||||| |||| |||||| | | ||| |||| | || || ||||| |||||| | Sbjct 12766008 GGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTA 12765949 Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303 | ||| |||||| | || |||||| ||| | |||||||||||||| | ||| |||||||| Sbjct 12765948 GGACTTAGACACTGCCCGAACTCCCACGAGGGGCAGCAGTGGGGAGTCTTGGACAATGGG 12765889 Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTC 361 | |||||| ||| |||||| |||||||| || |||| | | | | ||||||||| Sbjct 12765888 CGAAAGCCCGATCCAGCAATATCGCGTGAGTGAATAAGGGCAATGCCACTTGTAAAGCTC 12765829 Query 362 TGTCCTC--AAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 | || || | | ||| ||||| ||| ||||| |||||| |||||| ||||| Sbjct 12765828 TTTCTTCGAATGTGCGATCATGACATGACTCGAGGAAGAAGCCTCGGCTA---CCGTGCT 12765772 Query 420 AGCA 423 |||| Sbjct 12765771 AGCA 12765768 >seq8 Length=30429317 Score = 125 bits (138), Expect = 2e-26 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 |||||||| | ||||||||| | || ||||| |||| || ||| | | ||||| ||| Sbjct 4512052 ACCAAGGCAATGATCAGTAGTTGGTCTAAGAGGACGATCAGCTACACTAGGACTGAAACA 4512111 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 || ||| |||||||||||| ||||||||||||||| || | |||||||| ||||||||| Sbjct 4512112 CGACCCAGACTCCTACGGGAAGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGA 4512171 Query 315 TGCAGCAACGCCGC 328 | ||||| ||||| Sbjct 4512172 CGGAGCAATGCCGC 4512185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288