Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 215 2e-53
seq1 214 5e-53
seq5 210 7e-52
seq2 194 5e-47
seq4 168 2e-39
seq10 131 5e-28
seq8 125 2e-26
>seq6
Length=37594838
Score = 215 bits (238), Expect = 2e-53
Identities = 249/330 (75%), Gaps = 9/330 (3%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| ||||| |||| |||||| | | ||| |||| | || ||
Sbjct 25575056 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTTGG 25575115
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| | ||| ||| ||||||||| || || |||| | ||| |||||||||||||
Sbjct 25575116 ATGATCAGGTACACTGGGACTGAGACATGGCCCGGACTCTCAGGGG-GGCAGCAGTGGGG 25575174
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||| ||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 25575175 AATCTTGGACATTGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 25575234
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || || | || ||||| | ||| ||||| |||||||
Sbjct 25575235 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 25575294
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGGGCTAGCGTTATCCGGAA 460
||||||||| |||||||||||||||||||| || | ||||||| || ||| | |||||
Sbjct 25575295 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGGGCAAGTGTTCTTCGGAA 25575354
Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
| ||| | ||||||||| ||||| |||
Sbjct 25575355 TGACT-AGTCGTAAAGGGCATGTAGGCGGT 25575383
>seq1
Length=46529941
Score = 214 bits (236), Expect = 5e-53
Identities = 195/244 (80%), Gaps = 3/244 (1%)
Strand=Plus/Minus
Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318
||| |||||||||||||||||||||||||||| || | |||||||| ||||||||| | |
Sbjct 25530600 CCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGA 25530541
Query 319 GCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--A 376
|||| |||||||| | ||||||| |||||||| || ||| | ||| |||| |
Sbjct 25530540 GCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAA 25530481
Query 377 TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436
|||||||||| |||||| |||| ||||||||| ||||||||||||||||||| ||
Sbjct 25530480 CAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGAC 25530421
Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496
||| || ||||||||||||||| | | |||||||||| || |||||||| || | |
Sbjct 25530420 AGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCA 25530362
Query 497 AGTC 500
||||
Sbjct 25530361 AGTC 25530358
Score = 78.8 bits (86), Expect = 3e-12
Identities = 58/68 (85%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||||||||||||| ||| || |||||||||||||| |||||||||| | | |||||
Sbjct 20659761 GATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAG 20659702
Query 227 GGTGATCG 234
| ||||||
Sbjct 20659701 GATGATCG 20659694
>seq5
Length=38039368
Score = 210 bits (232), Expect = 7e-52
Identities = 149/171 (87%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||||||||||| ||| || ||||||||||||| |||||||||| || |
Sbjct 5695551 GCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGATC 5695492
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 5695491 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 5695432
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
|||||||||| || | |||||||| ||||||||| | ||||| ||||||||
Sbjct 5695431 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTG 5695381
>seq2
Length=22967634
Score = 194 bits (214), Expect = 5e-47
Identities = 143/167 (86%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || ||||||||||||| |||||||||| |
Sbjct 22687570 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGGT 22687511
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||| | ||| |||||||||||||||||
Sbjct 22687510 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCCAGACTCCTACGGGAGGCAG 22687451
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326
||||||||||| || | |||||||| ||||||||| | ||||| |||
Sbjct 22687450 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCC 22687404
>seq4
Length=26741765
Score = 168 bits (186), Expect = 2e-39
Identities = 147/182 (81%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281
|||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||
Sbjct 139008 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCA 139067
Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341
||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||||
Sbjct 139068 GTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAG 139127
Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAA 399
||| |||||||| || ||| | ||| |||| | |||||||||| |||||| ||
Sbjct 139128 GCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAA 139187
Query 400 GC 401
||
Sbjct 139188 GC 139189
>seq10
Length=28350858
Score = 131 bits (144), Expect = 5e-28
Identities = 177/244 (73%), Gaps = 7/244 (3%)
Strand=Plus/Minus
Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243
||||| |||| |||||| | | ||| |||| | || || ||||| |||||| |
Sbjct 12766008 GGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTA 12765949
Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303
| ||| |||||| | || |||||| ||| | |||||||||||||| | ||| ||||||||
Sbjct 12765948 GGACTTAGACACTGCCCGAACTCCCACGAGGGGCAGCAGTGGGGAGTCTTGGACAATGGG 12765889
Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTC 361
| |||||| ||| |||||| |||||||| || |||| | | | | |||||||||
Sbjct 12765888 CGAAAGCCCGATCCAGCAATATCGCGTGAGTGAATAAGGGCAATGCCACTTGTAAAGCTC 12765829
Query 362 TGTCCTC--AAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419
| || || | | ||| ||||| ||| ||||| |||||| |||||| |||||
Sbjct 12765828 TTTCTTCGAATGTGCGATCATGACATGACTCGAGGAAGAAGCCTCGGCTA---CCGTGCT 12765772
Query 420 AGCA 423
||||
Sbjct 12765771 AGCA 12765768
>seq8
Length=30429317
Score = 125 bits (138), Expect = 2e-26
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254
|||||||| | ||||||||| | || ||||| |||| || ||| | | ||||| |||
Sbjct 4512052 ACCAAGGCAATGATCAGTAGTTGGTCTAAGAGGACGATCAGCTACACTAGGACTGAAACA 4512111
Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314
|| ||| |||||||||||| ||||||||||||||| || | |||||||| |||||||||
Sbjct 4512112 CGACCCAGACTCCTACGGGAAGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGA 4512171
Query 315 TGCAGCAACGCCGC 328
| ||||| |||||
Sbjct 4512172 CGGAGCAATGCCGC 4512185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497599820288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |