Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 1e-27
seq6 127 5e-27
>seq1
Length=46529941
Score = 129 bits (142), Expect = 1e-27
Identities = 142/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 25530467 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 25530408
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 25530407 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 25530348
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 25530347 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 25530288
Query 185 AGTGGAATT 193
||||||
Sbjct 25530287 GAGGGAATT 25530279
Score = 78.8 bits (86), Expect = 2e-12
Identities = 124/178 (70%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 98 AGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAA 157
|| ||| || | ||||| | || ||| | | |||||||||| || || | ||||
Sbjct 15421631 AGTTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGATAGGCGGTGGAAA 15421572
Query 158 CTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTA 217
| | ||| |||| | | ||||||| |||||| | ||| ||||||||||||| |
Sbjct 15421571 CAACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATT 15421512
Query 218 GATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAG 275
|| || | | |||||||| |||||| || |||||| | | ||||||||||||
Sbjct 15421511 GAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAG 15421454
>seq6
Length=37594838
Score = 127 bits (140), Expect = 5e-27
Identities = 120/153 (78%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
||||||||| | ||||| |||||||| ||||||| | | |||||| ||| |||||
Sbjct 25575555 AGTGGAATTTCGTGTGTAAGGGTGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAA 25575614
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
| | ||| |||| || ||| ||| || ||||||| |||||||| |||| ||||
Sbjct 25575615 GACAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACACGATT 25575674
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||||||||||||||| ||||||||||||||
Sbjct 25575675 AGATACCCTGGTAGTCCATGCCGTAAACGATGA 25575707
Score = 104 bits (114), Expect = 6e-20
Identities = 87/106 (82%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGG 58
||| ||||| |||||||||||||||| |||||||||||||||||||| || | |||||
Sbjct 25575278 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGG 25575337
Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104
|| || ||| | |||||| ||| | ||||||||| ||||| |||
Sbjct 25575338 GCAAGTGTTCTTCGGAATGACTAGTCGTAAAGGGCATGTAGGCGGT 25575383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203199855616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |