Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-27 seq6 127 5e-27 >seq1 Length=46529941 Score = 129 bits (142), Expect = 1e-27 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 25530467 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 25530408 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 25530407 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 25530348 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 25530347 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 25530288 Query 185 AGTGGAATT 193 |||||| Sbjct 25530287 GAGGGAATT 25530279 Score = 78.8 bits (86), Expect = 2e-12 Identities = 124/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 98 AGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAA 157 || ||| || | ||||| | || ||| | | |||||||||| || || | |||| Sbjct 15421631 AGTTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGATAGGCGGTGGAAA 15421572 Query 158 CTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTA 217 | | ||| |||| | | ||||||| |||||| | ||| ||||||||||||| | Sbjct 15421571 CAACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATT 15421512 Query 218 GATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAG 275 || || | | |||||||| |||||| || |||||| | | |||||||||||| Sbjct 15421511 GAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAG 15421454 >seq6 Length=37594838 Score = 127 bits (140), Expect = 5e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | ||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 25575555 AGTGGAATTTCGTGTGTAAGGGTGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAA 25575614 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 | | ||| |||| || ||| ||| || ||||||| |||||||| |||| |||| Sbjct 25575615 GACAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACACGATT 25575674 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||||||||| Sbjct 25575675 AGATACCCTGGTAGTCCATGCCGTAAACGATGA 25575707 Score = 104 bits (114), Expect = 6e-20 Identities = 87/106 (82%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGG 58 ||| ||||| |||||||||||||||| |||||||||||||||||||| || | ||||| Sbjct 25575278 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGG 25575337 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || || ||| | |||||| ||| | ||||||||| ||||| ||| Sbjct 25575338 GCAAGTGTTCTTCGGAATGACTAGTCGTAAAGGGCATGTAGGCGGT 25575383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616