Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 1e-24
seq11 111 5e-22
seq2 87.8 6e-15
seq10 78.8 3e-12
>seq1
Length=46529941
Score = 120 bits (132), Expect = 1e-24
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| || ||| | | |||||||| | |||||||| |||||
Sbjct 25048478 CGAGTCTTCATAGGGCGATTATCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 25048537
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | | | | || |||||||||||| ||| |||||||| |||
Sbjct 25048538 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 25048597
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 25048598 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 25048657
Query 182 CCGAAA 187
||||||
Sbjct 25048658 CCGAAA 25048663
>seq11
Length=27185770
Score = 111 bits (122), Expect = 5e-22
Identities = 146/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | |
Sbjct 2183730 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 2183787
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| |||||||| |||| ||| || | |||||||||| | |||||||
Sbjct 2183788 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 2183846
Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515
||||||||| |||||||| ||||| | ||| || || | |||| ||||
Sbjct 2183847 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 2183905
Query 516 TCTACCGAAGCAGTGGGAT 534
||| ||||||| |||||||
Sbjct 2183906 TCTGCCGAAGCTGTGGGAT 2183924
>seq2
Length=22967634
Score = 87.8 bits (96), Expect = 6e-15
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||
Sbjct 9848163 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATACATG 9848104
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
|| |||||||| | | | | || |||||||||| ||| |||||||| |||
Sbjct 9848103 ACCTGGATGAAGCTTGGATGAAACTAAGCAAAGGTCCGAACTGACTGATGTTGAAGAATC 9848044
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152
|| ||||||| ||||| ||||||||||| ||
Sbjct 9848043 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 9848013
>seq10
Length=28350858
Score = 78.8 bits (86), Expect = 3e-12
Identities = 86/112 (77%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419
||||||||||||| ||||||| ||| ||| | | || || || | ||| |||| |||
Sbjct 17839022 CAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGATAGC 17839079
Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471
|||| ||| || | |||||||||| | |||||||||||||| | | ||||
Sbjct 17839080 CAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTTATATCTCA 17839130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689599797248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |