Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1 120 1e-24 seq11 111 5e-22 seq2 87.8 6e-15 seq10 78.8 3e-12 >seq1 Length=46529941 Score = 120 bits (132), Expect = 1e-24 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| || ||| | | |||||||| | |||||||| ||||| Sbjct 25048478 CGAGTCTTCATAGGGCGATTATCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 25048537 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 25048538 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 25048597 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 25048598 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 25048657 Query 182 CCGAAA 187 |||||| Sbjct 25048658 CCGAAA 25048663 >seq11 Length=27185770 Score = 111 bits (122), Expect = 5e-22 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 2183730 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 2183787 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 2183788 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 2183846 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 2183847 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 2183905 Query 516 TCTACCGAAGCAGTGGGAT 534 ||| ||||||| ||||||| Sbjct 2183906 TCTGCCGAAGCTGTGGGAT 2183924 >seq2 Length=22967634 Score = 87.8 bits (96), Expect = 6e-15 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||| Sbjct 9848163 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATACATG 9848104 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 || |||||||| | | | | || |||||||||| ||| |||||||| ||| Sbjct 9848103 ACCTGGATGAAGCTTGGATGAAACTAAGCAAAGGTCCGAACTGACTGATGTTGAAGAATC 9848044 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| ||||||||||| || Sbjct 9848043 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 9848013 >seq10 Length=28350858 Score = 78.8 bits (86), Expect = 3e-12 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| ||||||| ||| ||| | | || || || | ||| |||| ||| Sbjct 17839022 CAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGATAGC 17839079 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 |||| ||| || | |||||||||| | |||||||||||||| | | |||| Sbjct 17839080 CAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTTATATCTCA 17839130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599797248