Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq10 668 0.0
seq9 136 1e-29
seq5 125 2e-26
>seq10
Length=28350858
Score = 668 bits (740), Expect = 0.0
Identities = 471/534 (88%), Gaps = 8/534 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||| ||||
Sbjct 10299460 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCATTATC 10299519
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||| ||||||||| ||||||||||||| || |||| |||
Sbjct 10299520 TTTTAACAGATGTGCCGCCCCAGTCAAACTCCCTACCTGACAATGTCTTCCGCCCGAATC 10299579
Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181
||| || | || ||||| |||| || || || | | || | || || ||
Sbjct 10299580 GGCTCGAGGGACTCGGGCCTTAGAGCCAAAACGAGG--GGCCAGGCCCCGCTTGCGACTC 10299637
Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241
| || ||||||||| |||| ||| ||||||||||||||||||||||| | |||||||
Sbjct 10299638 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGAG-GGCTCCC 10299696
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10299697 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 10299756
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
||||| |||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 10299757 TCTTCATTCCCCACTGATTCCGCCAAACCCGTTCCCTTGGCTATGGTTTCGCTGGATAGT 10299816
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10299817 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 10299876
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10299877 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 10299936
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 10299937 TTTCTTCACTTTGACATTCAGAGCACTGGGAAGAAATCACATTGCGTCAGCATC 10299990
>seq9
Length=31548187
Score = 136 bits (150), Expect = 1e-29
Identities = 187/256 (73%), Gaps = 14/256 (5%)
Strand=Plus/Minus
Query 286 GTCAAGCTCAACAGGGTCT-TCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGG 341
|| || || || |||||| ||||||| ||||||||||| |||| | | || | | |
Sbjct 6951570 GTTAACCTTAATAGGGTCACTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCG 6951511
Query 342 CTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400
| || ||||||| ||||||||| || |||| || || ||| ||||||| ||||| ||
Sbjct 6951510 CCGTTGGTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCAAACG 6951451
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA--GTCATAGTTACTCCCG 458
||||| |||||||| | || |||||| || |||| | || ||||||||||| |
Sbjct 6951450 TGTCACAAATTAGATAA---GGTATTTGGTTAGCTTATAACTCTGTTATAGTTACTCCTG 6951394
Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518
|||||||| | || || ||| ||||| |||| ||| ||| | ||| || || ||||
Sbjct 6951393 CCGTTTACACACGGTTCGTTAAATTTATTCATTTTAACAGTTAGA----AGGACAAAAAT 6951338
Query 519 CACATTGCGTCAACAT 534
|| |||| || | |||
Sbjct 6951337 CATATTGTGTTAGCAT 6951322
>seq5
Length=38039368
Score = 125 bits (138), Expect = 2e-26
Identities = 124/157 (79%), Gaps = 5/157 (3%)
Strand=Plus/Plus
Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254
|| |||| ||| ||| || ||||||||||| | | | |||| |||||||||||||||
Sbjct 9291010 AATAACGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTTCCACTTATTCTACAC 9291068
Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314
||||||| |||| | | ||||||| || |||||||||||| || |||||| || |
Sbjct 9291069 CTCTCAAATCATCTTATGAAGTCGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 9291125
Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351
||||||| | ||||||| || |||| |||||||||||
Sbjct 9291126 CTGATTCTGTCAAGCCCATT-CCTTAGCTGTGGTTTC 9291161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199803776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |