Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 668 0.0 seq9 136 1e-29 seq5 125 2e-26 >seq10 Length=28350858 Score = 668 bits (740), Expect = 0.0 Identities = 471/534 (88%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||||||| |||| Sbjct 10299460 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCATTATC 10299519 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||| ||||||||| ||||||||||||| || |||| ||| Sbjct 10299520 TTTTAACAGATGTGCCGCCCCAGTCAAACTCCCTACCTGACAATGTCTTCCGCCCGAATC 10299579 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 ||| || | || ||||| |||| || || || | | || | || || || Sbjct 10299580 GGCTCGAGGGACTCGGGCCTTAGAGCCAAAACGAGG--GGCCAGGCCCCGCTTGCGACTC 10299637 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| ||||||||||||||||||||||| | ||||||| Sbjct 10299638 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGAG-GGCTCCC 10299696 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10299697 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 10299756 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||| |||||| ||||||||||||| ||||||||||||||| |||||||||| |||||| Sbjct 10299757 TCTTCATTCCCCACTGATTCCGCCAAACCCGTTCCCTTGGCTATGGTTTCGCTGGATAGT 10299816 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10299817 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 10299876 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10299877 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 10299936 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 10299937 TTTCTTCACTTTGACATTCAGAGCACTGGGAAGAAATCACATTGCGTCAGCATC 10299990 >seq9 Length=31548187 Score = 136 bits (150), Expect = 1e-29 Identities = 187/256 (73%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCT-TCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGG 341 || || || || |||||| ||||||| ||||||||||| |||| | | || | | | Sbjct 6951570 GTTAACCTTAATAGGGTCACTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCG 6951511 Query 342 CTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 | || ||||||| ||||||||| || |||| || || ||| ||||||| ||||| || Sbjct 6951510 CCGTTGGTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCAAACG 6951451 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA--GTCATAGTTACTCCCG 458 ||||| |||||||| | || |||||| || |||| | || ||||||||||| | Sbjct 6951450 TGTCACAAATTAGATAA---GGTATTTGGTTAGCTTATAACTCTGTTATAGTTACTCCTG 6951394 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||| | || || ||| ||||| |||| ||| ||| | ||| || || |||| Sbjct 6951393 CCGTTTACACACGGTTCGTTAAATTTATTCATTTTAACAGTTAGA----AGGACAAAAAT 6951338 Query 519 CACATTGCGTCAACAT 534 || |||| || | ||| Sbjct 6951337 CATATTGTGTTAGCAT 6951322 >seq5 Length=38039368 Score = 125 bits (138), Expect = 2e-26 Identities = 124/157 (79%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || |||| ||| ||| || ||||||||||| | | | |||| ||||||||||||||| Sbjct 9291010 AATAACGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTTCCACTTATTCTACAC 9291068 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 ||||||| |||| | | ||||||| || |||||||||||| || |||||| || | Sbjct 9291069 CTCTCAAATCATCTTATGAAGTCGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 9291125 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||| | ||||||| || |||| ||||||||||| Sbjct 9291126 CTGATTCTGTCAAGCCCATT-CCTTAGCTGTGGTTTC 9291161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199803776