Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5 168 2e-39 seq7 87.8 6e-15 >seq5 Length=38039368 Score = 168 bits (186), Expect = 2e-39 Identities = 391/572 (68%), Gaps = 28/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| | | || ||||| | ||| || | Sbjct 804285 TCGACAGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTGCACTCGAGGACCA-ATGTC 804227 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||| | Sbjct 804226 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCTA 804168 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 804167 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 804110 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | ||| || | | | | Sbjct 804109 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCAGAAGGGGGCCTTC 804050 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 ||| || ||||||| || | | || || | || |||||| ||| | | || Sbjct 804049 TTCAC---CTTCCACCTAAGCTGCGTAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 803995 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| |||| | || | | ||||||| || | | Sbjct 803994 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 803935 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | || | ||||||| | || |||||||||| ||||||| |||| Sbjct 803934 TATTTCACCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 803876 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 803875 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 803816 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| || ||| || || || | | |||| | ||| ||| Sbjct 803815 ACCGGGGCTTC-GGTAGCCGGCT-----TCCCTGTCATCAGTTCACCAACTTCCTTGACC 803762 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 803761 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 803730 >seq7 Length=32884216 Score = 87.8 bits (96), Expect = 6e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 7183812 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 7183870 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 7183871 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 7183929 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 7183930 TAGAAACTGTCTACCTGAGACTGTCCC 7183956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399795712