Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq5 168 2e-39
seq7 87.8 6e-15
>seq5
Length=38039368
Score = 168 bits (186), Expect = 2e-39
Identities = 391/572 (68%), Gaps = 28/572 (5%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| | | || ||||| | ||| || |
Sbjct 804285 TCGACAGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTGCACTCGAGGACCA-ATGTC 804227
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| | | | |||| |||||||| |||||||||||| |||||||||| | || |||| |
Sbjct 804226 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCTA 804168
Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176
||||| | ||| | |||||||| || | || || |||||||||| ||
Sbjct 804167 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 804110
Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232
|| | | ||||||||||| ||| | | ||| | | ||| || | | | |
Sbjct 804109 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCAGAAGGGGGCCTTC 804050
Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290
||| || ||||||| || | | || || | || |||||| ||| | | ||
Sbjct 804049 TTCAC---CTTCCACCTAAGCTGCGTAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 803995
Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349
| ||| | | |||||||| |||| | || | | ||||||| || | |
Sbjct 803994 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 803935
Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408
||||||||| | || | ||||||| | || |||||||||| ||||||| ||||
Sbjct 803934 TATTTCACCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 803876
Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 803875 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 803816
Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528
|| |||||||| || ||| || || || | | |||| | ||| |||
Sbjct 803815 ACCGGGGCTTC-GGTAGCCGGCT-----TCCCTGTCATCAGTTCACCAACTTCCTTGACC 803762
Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|||| |||| ||||||||||||| || ||||
Sbjct 803761 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 803730
>seq7
Length=32884216
Score = 87.8 bits (96), Expect = 6e-15
Identities = 110/147 (75%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || |
Sbjct 7183812 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 7183870
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| | | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 7183871 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 7183929
Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146
||||| | ||| | ||||||||
Sbjct 7183930 TAGAAACTGTCTACCTGAGACTGTCCC 7183956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702399795712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |