Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4 116 8e-24 seq5 102 2e-19 seq2 95.1 3e-17 seq1 95.1 3e-17 seq8 75.2 2e-11 >seq4 Length=26741765 Score = 116 bits (128), Expect = 8e-24 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| | | | Sbjct 139164 TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGCGGCATTG 139106 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || ||||| |||||||||||||||||||||| || Sbjct 139105 CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 139046 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | |||||||||||| ||| ||||| || | ||||||| || Sbjct 139045 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 139005 >seq5 Length=38039368 Score = 102 bits (112), Expect = 2e-19 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| | | ||| |||| || ||| |||||| || ||||| ||||||||| Sbjct 5695377 CCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGC 5695436 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || | Sbjct 5695437 CTCCCGTAGGAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCA 5695496 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 ||| ||| | | || ||| | || || | || |||| ||||| ||||| Sbjct 5695497 GCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCA 5695552 >seq2 Length=22967634 Score = 95.1 bits (104), Expect = 3e-17 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| | | Sbjct 22687416 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCTG 22687475 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||| ||||| || | ||||||| || | ||| ||| | | || ||| Sbjct 22687476 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 22687535 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 | || || | || |||| ||||| Sbjct 22687536 AAGTTATTGCCTCACCAACTAGCTAAT 22687562 >seq1 Length=46529941 Score = 95.1 bits (104), Expect = 3e-17 Identities = 133/188 (71%), Gaps = 18/188 (10%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 25530431 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 25530479 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 25530480 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGC 25530532 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 25530533 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 25530592 Query 181 GAGTTTGG 188 |||| ||| Sbjct 25530593 GAGTCTGG 25530600 >seq8 Length=30429317 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| ||||||||| |||||||||||| ||| || Sbjct 4512171 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGTAGGAGTCTGGGTCG 4512112 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| | | ||| | || | |||||| ||| Sbjct 4512111 TGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGA 4512076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799871744