Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 8e-24
seq5 102 2e-19
seq2 95.1 3e-17
seq1 95.1 3e-17
seq8 75.2 2e-11
>seq4
Length=26741765
Score = 116 bits (128), Expect = 8e-24
Identities = 123/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127
||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| | | |
Sbjct 139164 TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGCGGCATTG 139106
Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187
|| |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||
Sbjct 139105 CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 139046
Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
| |||||||||||| ||| ||||| || | ||||||| ||
Sbjct 139045 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 139005
>seq5
Length=38039368
Score = 102 bits (112), Expect = 2e-19
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171
||| ||||| | | ||| |||| || ||| |||||| || ||||| |||||||||
Sbjct 5695377 CCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGC 5695436
Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231
||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || |
Sbjct 5695437 CTCCCGTAGGAGTCTGGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGATCA 5695496
Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287
||| ||| | | || ||| | || || | || |||| ||||| |||||
Sbjct 5695497 GCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCA 5695552
>seq2
Length=22967634
Score = 95.1 bits (104), Expect = 3e-17
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| | |
Sbjct 22687416 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCTG 22687475
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252
||||||||| ||| ||||| || | ||||||| || | ||| ||| | | || |||
Sbjct 22687476 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 22687535
Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279
| || || | || |||| |||||
Sbjct 22687536 AAGTTATTGCCTCACCAACTAGCTAAT 22687562
>seq1
Length=46529941
Score = 95.1 bits (104), Expect = 3e-17
Identities = 133/188 (71%), Gaps = 18/188 (10%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 25530431 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 25530479
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 25530480 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGC 25530532
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 25530533 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 25530592
Query 181 GAGTTTGG 188
|||| |||
Sbjct 25530593 GAGTCTGG 25530600
>seq8
Length=30429317
Score = 75.2 bits (82), Expect = 2e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || ||| |||||| || ||||| ||||||||| |||||||||||| ||| ||
Sbjct 4512171 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCTTCCCGTAGGAGTCTGGGTCG 4512112
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
||| ||||| | | ||| | || | |||||| |||
Sbjct 4512111 TGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGA 4512076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068799871744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |