Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 277 5e-72 seq12 89.7 2e-15 >seq1 Length=46529941 Score = 277 bits (306), Expect = 5e-72 Identities = 255/315 (81%), Gaps = 12/315 (4%) Strand=Plus/Minus Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 || |||||||||||||||||||||||||||||||||||||||||| | |||||||| | Sbjct 43880754 CCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACG 43880695 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GGCG 295 | |||| ||| || ||| |||||| |||||||| | ||| | | | || ||| Sbjct 43880694 AGGGCCGTGCAATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCGCG 43880637 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| | ||||| || ||||||||||||| | ||| |||||| Sbjct 43880636 TCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACATATTAG 43880577 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||| | |||| |||||| |||| |||||| ||| Sbjct 43880576 CTCTAGAATTACTACGGTTATCCGAGTAG-CATGTACCATCAAACAAACTATAACTTATT 43880518 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || ||| | | |||||| |||||||||||||| Sbjct 43880517 TAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTA 43880458 Query 474 ATCTTTGAGACAAGC 488 || |||||||||||| Sbjct 43880457 ATGTTTGAGACAAGC 43880443 >seq12 Length=23490084 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 430 AGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||| || ||| || |||||| ||||||||||||||||||||||||||||| Sbjct 18719 AGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGC 18660 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 18659 ATATGACTACTGGCAG 18644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399818752