Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1 277 5e-72
seq12 89.7 2e-15
>seq1
Length=46529941
Score = 277 bits (306), Expect = 5e-72
Identities = 255/315 (81%), Gaps = 12/315 (4%)
Strand=Plus/Minus
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 43880754 CCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACG 43880695
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GGCG 295
| |||| ||| || ||| |||||| |||||||| | ||| | | | || |||
Sbjct 43880694 AGGGCCGTGCAATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCGCG 43880637
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||||
Sbjct 43880636 TCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACATATTAG 43880577
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| |||||||||| |||| | |||| |||||| |||| |||||| |||
Sbjct 43880576 CTCTAGAATTACTACGGTTATCCGAGTAG-CATGTACCATCAAACAAACTATAACTTATT 43880518
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
||||||||||||||||||||||| || ||| | | |||||| ||||||||||||||
Sbjct 43880517 TAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTA 43880458
Query 474 ATCTTTGAGACAAGC 488
|| ||||||||||||
Sbjct 43880457 ATGTTTGAGACAAGC 43880443
>seq12
Length=23490084
Score = 89.7 bits (98), Expect = 2e-15
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 430 AGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
|||||||| || ||| || |||||| |||||||||||||||||||||||||||||
Sbjct 18719 AGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGC 18660
Query 489 ATATGACTACTGGCAG 504
||||||||||||||||
Sbjct 18659 ATATGACTACTGGCAG 18644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510399818752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |